CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	50.46	80.15
EER96005	Sorghum	plastid	83.18	73.84
Zm00001d019060_P001	Maize	plastid	81.64	72.76
TraesCS1A01G384300.1	Wheat	plastid	77.93	70.83
TraesCS2D01G575800.1	Wheat	plastid	77.78	70.69
HORVU1Hr1G084900.9	Barley	plastid	77.31	70.37
Os07t0190000-01	Rice	plasma membrane, plastid	77.31	70.27
TraesCS1D01G392500.1	Wheat	plastid	76.85	69.85
TraesCS2A01G565400.1	Wheat	plastid	77.47	69.63
TraesCS2B01G626400.2	Wheat	plastid	77.78	66.84
HORVU2Hr1G126150.4	Barley	plastid	77.93	66.45
GSMUA_Achr5P15060_001	Banana	plastid	70.06	65.7
GSMUA_Achr5P24730_001	Banana	plastid	70.83	64.92
KRH45527	Soybean	plastid	70.52	64.01
TraesCS1B01G411100.1	Wheat	mitochondrion	76.54	63.67
KRH45528	Soybean	plastid	69.91	63.45
PGSC0003DMT400041591	Potato	plastid	70.22	63.19
VIT_00s0218g00110.t01	Wine grape	plastid	69.91	63.09
KRG99484	Soybean	plastid	69.44	63.03
Solyc11g010850.1.1	Tomato	plastid	69.14	62.75
KRH39479	Soybean	plastid	69.29	61.51
EES19518	Sorghum	mitochondrion, plastid	64.81	58.17
EER89177	Sorghum	peroxisome	45.06	40.44

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	UniProt:A0A1W0W2N7
InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014
EnsemblPlants:OQU88632	ProteinID:OQU88632	ProteinID:OQU88632.1	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560
SMART:SM00861	EnsemblPlantsGene:SORBI_3002G064700	SUPFAM:SSF52518	SUPFAM:SSF52922	SignalP:SignalP-noTM	InterPro:THDP-binding
TIGRFAMs:TIGR00204	TMHMM:TMhelix	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
UniParc:UPI0009DC89DC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:6373222..6380384

Molecular Weight (calculated)

68616.7 Da

IEP (calculated)

7.277

GRAVY (calculated)

-0.047

Length

648 amino acids

Sequence
(BLAST)

001: MLLRLFLATT YLHAVLMVNA AGFVSAVPGA RSGGRRQQQR RSRRLREDDG FQGGAGGGSH IVGLLGPVED RLHLRREAGD AAAGHGELPD PHEEPLDLGA
101: GAAGGGAPRG DRAHRVQGVG HSSTSISAAL GMAVARDLLG RKNHVISVIG DGAMTAGQAY EAMNNSGFLD ANMIVVLNDN KQVSLPTATL DGPSKPVGAL
201: SRALTKLQSS TKFRRLREAA KSVTKQIGGP THEVAAKVDE YARGMISAWG SSLFEELGLY YIGPVDGHSV EDLVTIFEKV KAMPAPGPVL IHIVTEKGKG
301: YLPAEAAADR MHGVVKFEPS TGKQLKSKSS TLSYTQYFAE SLMGGDKVVA IHAAMGGGTG LNYFQKRFPE RCFDVGITEQ HAVTFAAGLA AEGLKPFCAI
401: YSSFLQRGYD QVVHDVDLQR LPVRFALDHA GLVGADGPTH CGAFDVTYMA CLPNMVVMAP ADEAELMHMV ATAAAIDDRP SCFRFPRGNG VGAVLPAGNK
501: GTPLEVGRGR VLVGGNRVAL LGYGTMVQAC LKAAEALKEH DVYVTVADAR FCKPLDTGLI RELAAEHEVL ITAEEGSIGG FGSHVGHYLS LTGLLDGPLK
601: LRSMFLPDRY IDHGAPQDQM EEAGLTPRHI AATVLSLLGR PLEAMQLK

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.