CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
plastid 3
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0142900-02	Rice	peroxisome, plastid	29.09	94.17
Zm00001d045383_P006	Maize	peroxisome	94.18	90.55
GSMUA_Achr5P06150_001	Banana	plastid	67.31	68.45
PGSC0003DMT400074817	Potato	cytosol, peroxisome, plastid	17.31	65.79
VIT_04s0008g04970.t01	Wine grape	plastid	63.85	64.12
KRH52494	Soybean	plastid	62.74	63.27
KRH61817	Soybean	plastid	62.47	62.55
Solyc08g066950.2.1	Tomato	plastid	59.14	60.23
Bra008967.1-P	Field mustard	plastid	57.62	59.77
AT5G11380.1	Thale cress	plastid	57.89	59.71
CDX69763	Canola	plastid	57.48	59.63
EES19518	Sorghum	mitochondrion, plastid	52.77	52.77
EER96005	Sorghum	plastid	49.03	48.49
OQU88632	Sorghum	endoplasmic reticulum, vacuole	40.44	45.06

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	EntrezGene:8070720	MapMan:9.1.2.2
UniProt:C5Z3V0	InterPro:Dxylulose-5-P_synthase	EnsemblPlants:EER89177	ProteinID:EER89177	ProteinID:EER89177.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	HAMAP:MF_00315	PFAM:PF02779
PFAM:PF02780	PFAM:PF13292	PANTHER:PTHR43322	PANTHER:PTHR43322:SF3	MetaCyc:PWY-6891	MetaCyc:PWY-6892
MetaCyc:PWY-7560	SMART:SM00861	EnsemblPlantsGene:SORBI_3010G032900	SUPFAM:SSF52518	SUPFAM:SSF52922	unigene:Sbi.8038
InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001A89AFE
RefSeq:XP_002437810.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:2611881..2617071

Molecular Weight (calculated)

79269.5 Da

IEP (calculated)

6.547

GRAVY (calculated)

-0.045

Length

722 amino acids

Sequence
(BLAST)

001: MDTAFLRPPL ARNLVYDEFA VLHPTSYPFH TLRYLRCNPM YSRPLLTTSP ASPSRGLTQR MAALPDVDDF FWEKDPTPIL DTIDAPIHLK NLSSKELKQL
101: ADEVRSEIAF IMSRKCQPCG PGRSVVELTI AIHYVFNAPM DKILWDAGQH AYAHKILTGR RSQFHTIKQK NGLSGFTSRF ESEYDPFGAG HGCNSLSAGL
201: GMAVARDING RKNRIVTVIS NWTTMAGQVY EAMGHAGFLD SNMVVILNDS CHTLLPKADG RPKMSVNAFS SALSKIQSSK GFRRFREAAK GLAKWFGKGM
301: HEFAAKVDEY ARGMIGPHGA TLFEELGLYY IGPIDGRNID DLICVLKEVA SLDSTGPVLV HVITGTESDT DGNIRSEITA SEEGPSNSSN DLLKFLETGL
401: SRTYNDCFVE ALTAEAENDK RIVVVHGGMG MDRSLRLFQS RFPDRFFDLG IAEQHAVTFS AGLACGGLKP FCIIPSTFLQ RAYDQIVEDV DMQKIPVRFA
501: ITNAGLVGSE GPTNSGPFDI TFMSCLPNMI VMSPSNEDEL IDMVATAAMI EDKPICFRYP RGAIVGTSGT LTYGNPLEIG KGEILVEGKE IAFLGYGEVV
601: QRCLIARSLL SNFGIQATVA NARFCKPLDI DLIRTLCQQH SFLITVEEGT VGGFGSHVSQ FISLDGLLDG RIKWRPIVLP DRYIEHASLA EQLDLAGLTA
701: HHIAATALTL LGRHRDALLL MK

Best Arabidopsis Sequence Match ( AT5G11380.1 )
(BLAST)

001: MGSASIGYQF GISARFYGNF NLSSDITVSS LPCKLDVSIK SLFSAPSSTH KEYSNRARVC SLPNTDGYCD EKFETPILDS IETPLQLKNL SVKELKLLAD
101: EIRTELHSVL WKKTQKSMNP SFAAIELTLA LHYVFRAPVD NILWDAVEQT YAHKVLTRRW SAIPSRQNSG ISGVTSRLES EYDSFGTGHG CNSISAGLGL
201: AVARDMKGKR DRVVAVIDNV TITAGQAYEA MSNAGYLDSN MIVILNDSRH SLHPNMEEGS KASISALSSI MSKIQSSKVF RKFRELAKAM TKRIGKGMYE
301: WAAKVDEYAR GMVGPTGSTL FEELGLYYIG PVDGHNIEDL VCVLREVSSL DSMGPVLVHV ITEGNRDAET VKNIMVKDRR TYSDCFVEAL VMEAEKDRDI
401: VVVHAGMEMD PSLLTFQERF PDRFFNVGMA EQHAVTFSAG LSSGGLKPFC IIPSAFLQRA YDQVVHDVDR QRKAVRFVIT SAGLVGSDGP VQCGAFDIAF
501: MSSLPNMIAM APADEDELVN MVATAAYVTD RPVCFRFPRG SIVNMNYLVP TGLPIEIGRG RVLVEGQDVA LLGYGAMVQN CLHAHSLLSK LGLNVTVADA
601: RFCKPLDIKL VRDLCQNHKF LITVEEGCVG GFGSHVAQFI ALDGQLDGNI KWRPIVLPDG YIEEASPREQ LALAGLTGHH IAATALSLLG RTREALLLMS

Arabidopsis Description

DXPS31-D-deoxyxylulose 5-phosphate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LFL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.