CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

cytosol 2
plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91615
EER93295
EER95459
EER96498
EER98072
EES03920
EES15687
EES18308
EES19518
KXG25038

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	EES03920	AT1G08290.1	24104567
AT4G15560.1	EES18308	AT1G08290.1	24104567
AT4G15560.1	EES15687	AT2G26080.1	24104567
AT4G15560.1	EER91615	AT3G22970.1	24104567
AT4G15560.1	EER93295	AT3G22970.1	24104567
AT4G15560.1	EER95459	AT3G22970.1	24104567
AT4G15560.1	EER98072	AT3G22970.1	24104567
AT4G15560.1	EES19518	AT4G15560.1	21798944
AT4G15560.1	EER96498	AT4G26780.1	24104567
AT4G15560.1	KXG25038	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038170_P001	Maize	plastid	92.94	89.71
GSMUA_Achr10P...	Banana	cytosol	78.81	89.61
TraesCS1A01G255800.1	Wheat	plastid	87.81	89.04
TraesCS1D01G255100.1	Wheat	plastid	87.53	88.76
Os05t0408900-03	Rice	plastid	88.5	88.75
TraesCS1B01G266500.1	Wheat	plastid	87.4	88.62
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	85.6	85.12
Bra001832.1-P	Field mustard	peroxisome	71.47	83.5
Solyc01g067890.2.1	Tomato	plastid	82.41	82.75
KRH02173	Soybean	plastid	81.3	82.44
PGSC0003DMT400058821	Potato	plastid	81.99	82.34
VIT_05s0020g02130.t01	Wine grape	plastid	81.44	82.12
KRH20991	Soybean	plastid	81.44	81.55
KRH50940	Soybean	plastid	81.44	80.22
CDY64791	Canola	plastid	78.53	79.19
Bra033495.1-P	Field mustard	plastid	77.56	79.1
AT4G15560.1	Thale cress	plastid	78.39	78.94
GSMUA_Achr3P24940_001	Banana	plastid	81.72	78.88
CDX90583	Canola	plastid	74.65	78.8
Bra012779.1-P	Field mustard	plastid	74.52	78.66
CDY09752	Canola	plastid	77.98	78.41
KRH11287	Soybean	peroxisome, plastid	46.4	77.55
CDY32433	Canola	plastid	76.59	77.23
CDY48893	Canola	plastid	76.18	76.82
AT3G21500.3	Thale cress	plastid	70.78	75.48
CDY52177	Canola	plastid	75.21	74.08
EER96005	Sorghum	plastid	69.67	68.9
OQU88632	Sorghum	endoplasmic reticulum, vacuole	58.17	64.81
KRH16140	Soybean	mitochondrion, plastid	10.53	58.02
EER89177	Sorghum	peroxisome	52.77	52.77

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	EntrezGene:8085126	MapMan:9.1.2.2
UniProt:C5YXS7	InterPro:Dxylulose-5-P_synthase	EnsemblPlants:EES19518	ProteinID:EES19518	ProteinID:EES19518.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	HAMAP:MF_00315	PFAM:PF02779
PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4
MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	EnsemblPlantsGene:SORBI_3009G135500	SUPFAM:SSF52518
SUPFAM:SSF52922	unigene:Sbi.17795	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI0001A8939C	RefSeq:XP_002441088.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:49054790..49059182

Molecular Weight (calculated)

77860.4 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.096

Length

722 amino acids

Sequence
(BLAST)

001: MALWTTFSVP RGFLAVPAHH DSHFASAVEQ LHGHKLLQAR PLRPRRHHRP ACVSASLSPE REAEYYSQRP PTPLLDTINY PVHMKNLSVK ELRQLADELR
101: SDVIFHVSKT GGHLGSSLGV VELTVALHYV FNAPQDRILW DVGHQSYPHK ILTGRRDKMP TMRQTNGLAG FTKRAESEYD SFGTGHSSTT ISAALGMAVG
201: RDLKGGKNNV VAVIGDGAMT AGQAYEAMNN AGYLDSDMIV ILNDNKQVSL PTATLDGPVP PVGALSSALS KLQSSRPLRE LREVAKGVTK QIGGSVHELA
301: AKVDEYARGM ISGPGSSLFE ELGLYYIGPV DGHNIDDLIT ILNDVKSTKT TGPVLIHVVT EKGRGYPYAE RAADKYHGVA KFDPATGKQF KSPAKTLSYT
401: NYFAESLIAE AEQDSKIVAI HAAMGGGTGL NYFLRRFPSR CFDVGIAEQH AVTFAAGLAC EGLKPFCAIY SSFLQRGYDQ VVHDVDLQKL PVRFAMDRAG
501: LVGADGPTHC GAFDVAYMAC LPNMVVMAPS DEAELCHMVA TAAAIDDRPS CFRYPRGNGI GVPLPPNYKG TPLEVGKGRI LMEGDRVALL GYGSAVQYCL
601: AAASLVERHG LRVTVADARF CKPLDHALIR SLARSHEVII TVEEGSIGGF GSHVAQFMAL DGLLDGKLKW RPLVLPDRYI DHGSPADQLA EAGLTPSHIA
701: ATVFNILGQN REALAIMAVP NA

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.