CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0711400-01	Rice	mitochondrion	29.56	95.65
Os06t0611900-01	Rice	mitochondrion	45.87	94.28
Zm00001d023437_P001	Maize	mitochondrion	92.51	92.51
TraesCS3A01G250200.1	Wheat	mitochondrion	89.06	90.01
TraesCS3D01G250600.1	Wheat	mitochondrion	88.77	89.72
TraesCS3B01G279700.1	Wheat	plastid	88.68	89.62
HORVU3Hr1G067110.2	Barley	vacuole	84.84	85.66
GSMUA_Achr3P26310_001	Banana	mitochondrion	77.45	81.76
AT2G26080.1	Thale cress	mitochondrion	81.19	81.03
PGSC0003DMT400076966	Potato	mitochondrion	80.33	80.87
AT4G33010.1	Thale cress	mitochondrion	80.42	80.81
KRH61504	Soybean	mitochondrion	79.27	80.12
Solyc08g065220.2.1	Tomato	plastid	79.56	80.02
KRH52197	Soybean	mitochondrion	78.02	79.47
KRH05459	Soybean	mitochondrion	80.33	79.26
VIT_11s0016g02280.t01	Wine grape	mitochondrion	75.53	79.17
GSMUA_Achr1P14430_001	Banana	mitochondrion	74.09	79.02
KRH15534	Soybean	mitochondrion	80.23	78.94
CDX75316	Canola	mitochondrion	78.02	77.87
Bra011405.1-P	Field mustard	mitochondrion	78.02	77.8
CDX68930	Canola	mitochondrion	77.93	77.7
KRH05426	Soybean	peroxisome	25.72	74.03
VIT_04s0008g01300.t01	Wine grape	mitochondrion	74.66	72.91
CDY28279	Canola	cytosol	2.11	50.0

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EntrezGene:8066987	UniProt:C5YS41
ncoils:Coil	EnsemblPlants:EES15687	ProteinID:EES15687	ProteinID:EES15687.1	InterPro:GDC_P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004375	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006544	GO:GO:0006546	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:GcvP	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00711	PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
EnsemblPlantsGene:SORBI_3008G039900	SUPFAM:SSF53383	unigene:Sbi.10019	SignalP:SignalP-noTM	TIGRFAMs:TIGR00461	UniParc:UPI0001A885E2
RefSeq:XP_002441849.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3868948..3876160

Molecular Weight (calculated)

112152.0 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.120

Length

1042 amino acids

Sequence
(BLAST)

0001: MERARRHASR ALLRRLLAAA TTTTTTASPA TSSSRGISTL SPAAPAAGRQ QQQRRRPPPH QHAQGRPVSV SALQPSDTFP RRHNSATPAE QAAMATTCGF
0101: DGGLDALIDA TVPAAIRAPP MRFSGRFDAG LTESQMLDHM QRLASMNKAY KSFIGMGYYG THVPGVVLRN LMENPAWYTQ YTPYQAEIAQ GRLESLLNYQ
0201: TMVADLTGLP MSNASLLDEA TAAAEAMAMC NGIVRGKKKT FLIASNCHPQ TIDVCRTRAD GFDISVVVAD AKDFDYSGGD VCGVLVQYPG TEGEVLDYAQ
0301: FVRDAHAHGV KVVMATDLLA LTTLRPPGEI GADIAVGSAQ RFGVPMGYGG PHAAFLATSQ EYKRLMPGRI IGVSVDSTGK PALRMAMQTR EQHIRRDKAT
0401: SNICTAQALL ANMAAMYAVY HGPAGLKAIA DRVHGLAGTF AHGLKKLGTV TVQDLPFFDT VKVTCSDARA IAKEAVKNEM NLRVVDANTI TVAFDETSTL
0501: EDVDKLFKVF NNGKSASFTA ESLAPEVSSS IPSSLARESP YLTHPIFNMY HTEHELLRYL HKLQSKDLSL CHSMIPLGSC TMKLNATVEM MPVTYPNFAN
0601: LHPFAPTDQA AGYHEMFDDL GNLLCTITGF DSFSLQPNAG AAGEYAGLMV IRAYLNSRGE HHRDVCIIPV SAHGTNPASA AMVGMKIVAV GTDSKGNINI
0701: EELRKAAEAN KDNLAALMVT YPSTHGVYEE GIDEICRIIH ENGGQVYMDG ANMNAQVGLT SPGFIGADVC HLNLHKTFCI PHGGGGPGMG PIGVKKHLAP
0801: FLPSHPVIPT GGFPLPEKTD PLGTISAAPW GSALILPISY AYIAMMGSQG LTDASKIAIL NANYMAKRLE KHYPVLFRGV NGTVAHEFII DLRGFKTTAG
0901: IEPEDVAKRL MDYGFHSPTM SWPVPGTLMI EPTESESKAE LDRFCDALIS IREEIAEIEN GKADVLNNVL KGAPHPPQLL MGDTWSKPYS REYAAFPAAW
1001: LRGAKFWPTT GRVDNVYGDR NLICTLQQAS QVTEEAAAAA TA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.