Factsheet for VIT_04s0008g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G33010.1	Thale cress	mitochondrion	78.63	80.91
KRH05459	Soybean	mitochondrion	79.66	80.49
VIT_11s0016g02280.t01	Wine grape	mitochondrion	74.98	80.48
KRH15534	Soybean	mitochondrion	79.66	80.26
KRH52197	Soybean	mitochondrion	76.48	79.77
KRH61504	Soybean	mitochondrion	76.76	79.44
GSMUA_Achr3P26310_001	Banana	mitochondrion	73.2	79.13
AT2G26080.1	Thale cress	mitochondrion	77.41	79.12
Os06t0611900-01	Rice	mitochondrion	37.39	78.7
Bra011405.1-P	Field mustard	mitochondrion	75.45	77.03
GSMUA_Achr1P14430_001	Banana	mitochondrion	70.01	76.46
TraesCS3B01G279700.1	Wheat	plastid	73.38	75.95
TraesCS3A01G250200.1	Wheat	mitochondrion	73.2	75.75
TraesCS3D01G250600.1	Wheat	mitochondrion	73.01	75.56
Os01t0711400-01	Rice	mitochondrion	22.59	74.84
EES15687	Sorghum	mitochondrion	72.91	74.66
Zm00001d023437_P001	Maize	mitochondrion	72.35	74.09
HORVU3Hr1G051040.1	Barley	mitochondrion, peroxisome	6.0	73.56
KRH05426	Soybean	peroxisome	21.46	63.26
GSMUA_Achr8P05620_001	Banana	cytosol	3.19	31.78
CDY28279	Canola	cytosol	0.47	11.36

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	EntrezGene:100266170	wikigene:100266170	Gene3D:3.40.640.10	Gene3D:3.90.1150.10
EMBL:AM444649	ProteinID:CAN63089	ProteinID:CAN63089.1	ProteinID:CCB46575	ProteinID:CCB46575.1	ncoils:Coil
UniProt:F6H3P2	EMBL:FN595231	InterPro:GDC_P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544
GO:GO:0006546	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	InterPro:GcvP	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100266170	wikigene:LOC100266170
PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
TIGR:TC55197	TIGR:TC59901	TIGR:TC62152	TIGR:TC70296	TIGRFAMs:TIGR00461	UniParc:UPI0002109551
ArrayExpress:VIT_04s0008g01300	EnsemblPlantsGene:VIT_04s0008g01300	EnsemblPlants:VIT_04s0008g01300.t01	unigene:Vvi.4204	RefSeq:XP_002279590	RefSeq:XP_002279590.2
SEG:seg	:	:	:	:	:

Description

Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:F6H3P2]

Coordinates

chr4:+:1067727..1074097

Molecular Weight (calculated)

116311.0 Da

IEP (calculated)

7.639

GRAVY (calculated)

-0.101

Length

1067 amino acids

Sequence
(BLAST)

0001: MERARRIANR AILRRLVSES KQQRPCPRPQ NEGLVNSSFS GWRYVSSLPT CAFPNKTVRS DVLLGRNVMS SVGFGMGCQT RSISVEALKP SDTFPRRHNS
0101: ATPEEQTKMA ESCGYESLDS LVDATVPKSI RLESLKFSKF DEGLTESQMI EHMMQLAAKN KVFKSYIGMG YYNTFVPPVI LRNIMENPGW YTQYTPYQAE
0201: IAQGRLESLL NYQTLISDLT GLPMSNASLL DEGTAAAEAM AMCNNIMKGK KKTFIIASNC HPQTIDICKT RAEGFDLKVV TADLKDIDYK SGDVCGVLVQ
0301: YPDTEGEVLD YGEFIKNAHA NGVKVVMASD LLALTMLKPP GEFGADIVVG SAQRFGVPMG YGGPHAAFLA TSQEYKRMMP GRIIGVSVDA SGKPALRMAM
0401: QTREQHIRRD KATSNICTAQ ALLANMAAMF AVYHGPEGLK TIAQRVHGLA GVFALGLKKL GTVEVQGLPF FDTVKVKCAD AHAIADAACK SEINLRIVDS
0501: KTITVSFDET TTIEDVDKLF KVFACGKPVN FTAASLAPEV QTVIPSGLIR ESPFLTHPIF NLYHTEHELL RYMQRLQSKD LSLCHSMIPL GSCTMKLNAT
0601: TEMMPVTWPG FTDIHPFAPT EQAQGYQEMF NNLGELLCTI TGFDSFSLQP NAGASGEYAG LMVIRAYHKS RGDHHRDVCI IPVSAHGTNP ASAAMCGMKI
0701: VAVGTDAKGN INIEELRKAA EANKENLSAL MVTYPSTHGV YEEGIDEICK IIHDNGGQVY MDGANMNAQV GLTSPGWIGA DVCHLNLHKT FCIPHGGGGP
0801: GMGPIGVKKH LAPFLPSHPV VSTGGIPAPD KLQPLGTISA APWGSALILP ISYTYIAMMG SKGLTDASKI AILNANYMAK RLEKHYPILF RGVNGTVAHE
0901: FIVDLRGFKN TAGIEPEDIA KRLMDYGFHG PTMSWPVPGT LMIEPTESES KAELDRFCDA LISIRKEIAQ IENGKADVHN NVLKCRVLLI PHPCLWEIPG
1001: QNHTLGNMQP SQLPGFGLPS SGQLQDVLTM CTVTATSSAL FFQHHRLKNK LQLLPRLQLG APFCKVS

Best Arabidopsis Sequence Match ( AT4G33010.2 )
(BLAST)

001: MERARRLAYR GIVKRLVNDT KRHRNAETPH LVPHAPARYV SSLSPFISTP RSVNHTAAFG RHQQTRSISV DAVKPSDTFP RRHNSATPDE QTHMAKFCGF
101: DHIDSLIDAT VPKSIRLDSM KFSKFDAGLT ESQMIQHMVD LASKNKVFKS FIGMGYYNTH VPTVILRNIM ENPAWYTQYT PYQAEISQGR LESLLNFQTV
201: ITDLTGLPMS NASLLDEGTA AAEAMAMCNN ILKGKKKTFV IASNCHPQTI DVCKTRADGF DLKVVTSDLK DIDYSSGDVC GVLVQYPGTE GEVLDYAEFV
301: KNAHANGVKV VMATDLLALT VLKPPGEFGA DIVVGSAQRF GVPMGYGGPH AAFLATSQEY KRMMPGRIIG ISVDSSGKQA LRMAMQTREQ HIRRDKATSN
401: ICTAQALLAN MAAMYAVYHG PAGLKSIAQR VHGLAGIFSL GLNKLGVAEV QELPFFDTVK IKCSDAHAIA DAASKSEINL RVVDSTTITA SFDETTTLDD
501: VDKLFKVFAS GKPVPFTAES LAPEVQNSIP SSLTRESPYL THPIFNMYHT EHELLRYIHK LQSKDLSLCH SMIPLGSCTM KLNATTEMMP VTWPSFTDIH
601: PFAPVEQAQG YQEMFENLGD LLCTITGFDS FSLQPNAGAA GEYAGLMVIR AYHMSRGDHH RNVCIIPVSA HGTNPASAAM CGMKIITVGT DAKGNINIEE
701: VRKAAEANKD NLAALMVTYP STHGVYEEGI DEICNIIHEN GGQVYMDGAN MNAQVGLTSP GFIGADVCHL NLHKTFCIPH GGGGPGMGPI GVKNHLAPFL
801: PSHPVIPTGG IPQPEKTAPL GAISAAPWGS ALILPISYTY IAMMGSGGLT DASKIAILNA NYMAKRLEKH YPVLFRGVNG TVAHEFIIDL RGFKNTAGIE
901: PEDVAKRLMD YGFHGPTMSW PVPGTLMIEP TESESKAELD RFCDALISIR EEIAQIEKGN ADVQNNVLKL HIPHRC

Arabidopsis Description

GLDP1Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:A0A178UTF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.