Factsheet for Os01t0711400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
vacuole 1
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
YLoc:	cytosol

mitochondrion: 19010998
mitochondrion: 23027867
mitochondrion: 23356873
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05426	Soybean	peroxisome	75.16	66.85
Os06t0611900-01	Rice	mitochondrion	99.38	63.12
CDY28279	Canola	cytosol	6.83	50.0
TraesCS3D01G250600.1	Wheat	mitochondrion	95.03	29.68
TraesCS3B01G279700.1	Wheat	plastid	95.03	29.68
TraesCS3A01G250200.1	Wheat	mitochondrion	94.72	29.58
EES15687	Sorghum	mitochondrion	95.65	29.56
Zm00001d023437_P001	Maize	mitochondrion	95.03	29.37
HORVU3Hr1G067110.2	Barley	vacuole	93.79	29.26
GSMUA_Achr3P26310_001	Banana	mitochondrion	89.13	29.08
GSMUA_Achr1P14430_001	Banana	mitochondrion	87.27	28.76
VIT_11s0016g02280.t01	Wine grape	mitochondrion	87.89	28.47
KRH05459	Soybean	mitochondrion	90.37	27.56
AT4G33010.1	Thale cress	mitochondrion	88.51	27.48
KRH15534	Soybean	mitochondrion	90.37	27.48
KRH61504	Soybean	mitochondrion	87.89	27.45
KRH52197	Soybean	mitochondrion	86.96	27.37
AT2G26080.1	Thale cress	mitochondrion	88.51	27.3
PGSC0003DMT400076966	Potato	mitochondrion	87.58	27.25
Solyc08g065220.2.1	Tomato	plastid	87.27	27.12
CDX75316	Canola	mitochondrion	85.71	26.44
CDX68930	Canola	mitochondrion	85.71	26.41
Bra011405.1-P	Field mustard	mitochondrion	85.71	26.41
VIT_04s0008g01300.t01	Wine grape	mitochondrion	74.84	22.59

Protein Annotations

KEGG:00260+1.4.4.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:50.1.4	UniProt:A0A0P0V7A3	ProteinID:BAS73984.1
InterPro:GDC_P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375	GO:GO:0006546	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0055114	InterPro:IPR015421	InterPro:IPR015422
EnsemblPlantsGene:Os01g0711400	EnsemblPlants:Os01t0711400-01	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI00039394FD	SEG:seg	:	:	:

Description

Similar to Victorin binding protein. (Os01t0711400-01)

Coordinates

chr1:+:29563666..29566585

Molecular Weight (calculated)

34842.7 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.128

Length

322 amino acids

Sequence
(BLAST)

001: TYPSTHGVYE EGIDEICRII HENGGQVYMD GANMNAQVGL TSPGFIGADV CHLNLHKTFC IPHGGGGPGM GPIGVKKHLA PFLPSHPVIT TGGFPLPEKT
101: DPLGTISAAP WGSALILPIS YTYIAMMGSK GLTDASKIAI LNANYMAKRL EKHYPVLFRG VNGTVAHEFI IDLRGFKTTA GIEPEDVAKR LMDYGFHAPT
201: MSWPVPGTLM IEPTESESKA ELDRFCDALI SIREEIAEIE SGKADVNNNV LKSAPHPPQL LMSDSWTKPY SREYAAFPAA WLRGAKFWPT TCRVDNVYGD
301: RNLICTLQQG SQVAEEAAAA TA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.