CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
vacuole 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61504	Soybean	mitochondrion	94.92	94.18
Os01t0711400-01	Rice	mitochondrion	27.37	86.96
Os06t0611900-01	Rice	mitochondrion	42.62	86.0
KRH05459	Soybean	mitochondrion	86.31	83.62
KRH15534	Soybean	mitochondrion	86.41	83.47
PGSC0003DMT400076966	Potato	mitochondrion	82.8	81.84
AT4G33010.1	Thale cress	mitochondrion	82.7	81.58
Solyc08g065220.2.1	Tomato	plastid	82.5	81.47
VIT_11s0016g02280.t01	Wine grape	mitochondrion	78.89	81.19
GSMUA_Achr3P26310_001	Banana	mitochondrion	78.1	80.95
AT2G26080.1	Thale cress	mitochondrion	82.4	80.75
GSMUA_Achr1P14430_001	Banana	mitochondrion	75.86	79.43
TraesCS3A01G250200.1	Wheat	mitochondrion	79.86	79.24
TraesCS3D01G250600.1	Wheat	mitochondrion	79.86	79.24
TraesCS3B01G279700.1	Wheat	plastid	79.77	79.15
Bra011405.1-P	Field mustard	mitochondrion	79.86	78.18
EES15687	Sorghum	mitochondrion	79.47	78.02
Zm00001d023437_P001	Maize	mitochondrion	78.3	76.87
VIT_04s0008g01300.t01	Wine grape	mitochondrion	79.77	76.48
KRH05426	Soybean	peroxisome	26.69	75.41
HORVU3Hr1G051040.1	Barley	mitochondrion, peroxisome	6.26	73.56
CDY28279	Canola	cytosol	2.15	50.0
GSMUA_Achr8P05620_001	Banana	cytosol	5.18	49.53

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	EntrezGene:100814366	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02003411
ncoils:Coil	InterPro:GDC_P	EnsemblPlantsGene:GLYMA_06G052100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544
GO:GO:0006546	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	InterPro:GcvP	UniProt:I1K8C9	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH52197
ProteinID:KRH52197	ProteinID:KRH52197.1	HAMAP:MF_00711	PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00461	UniParc:UPI000233A29E	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:3920327..3926372

Molecular Weight (calculated)

111042.0 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.137

Length

1023 amino acids

Sequence
(BLAST)

0001: MERARRLANR AILKRLISTA GDNSHSLLRP KPENSILGSN RKLSHYVPSR SISLAALKPS DSFPRRHNSA TSEEQTKMAQ TCGFDTLDSL IDATVPKSIR
0101: LSDMSFSVFN EGLTESEMMS HMNSLASKNK CFKSYIGMGY YNTHVPPVIL RNIMENPAWY TQYTPYQAEI SQGRLESLMN FQTVISDLSA LPMSNASLLD
0201: EGTAAAEAMS MCNNIHKGKR KTFIIANNCH PQTVDVCVTR AAGFGIKVVT VDVKDVDYKS GDVCGVLVQY PGTEGEVLDY GEFVKEAHAY GVKVVMATDL
0301: LALTVLKPPG EMGVDIVVGS AQRFGVPMGY GGPHAAFLAT SQEYKRMMPG RIIGVSVDSG GKPALRMAMQ TREQHIRRDK ATSNICTAQA LLANMAAMYA
0401: VYHGPEGLKT IAQRVHGLAG VFAQGLKKLG TVEVQDHPFF DTVKIKTANA HAIADAARKN EINLRVVDGN TITVAFDETT TLEDVDNLFK VFSDGKPVSF
0501: TAASLAPEVQ TAVPSGLTRN SPYLTHPIFN TYHTEHEVLR YIHRLQSKDL SLCHSMIPLG SCTMKLNATT EMMPVTWPSF ANIHPFAPIE QAQGYQEMFE
0601: NLGKLLCTIT GFDSFSLQPN AGAAGEYAGL MVIRAYHLAR GDHHRNVCII PVSAHGTNPA SAAMCAMKIV SVGTDAKGNI NIEELRKAAE THKDNLAALM
0701: VTYPSTHGVY EEGIDEICKV IHDNGGQVYM DGANMNAQVG LTSPGWIGAD VCHLNLHKTF CIPHGGGGPG MGPIGVKKHL APFLPSHPVV STGGIPAPGK
0801: SQPLGTISAA PWGSALILPI SYSYIAMMGS KGLTEASKTA ILNANYMAKR LENHYPVLFR GVNGTVAHEF IVDLRGFKNT AGIEPEDVAK RLMDYGFHSP
0901: TMSFPVPGTL MIEPTESESK SELDRFCDAL ISIRQEIAEI EKGKADINNN VLKCAPHPPP VLMGDAWTKP YSREYAAFPA SWLRVSKFWP STGRIDNVYG
1001: DRNLVCTLLP TSQAVEEQAA ATA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.