Factsheet for VIT_11s0016g02280.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0711400-01	Rice	mitochondrion	28.47	87.89
Os06t0611900-01	Rice	mitochondrion	44.47	87.18
PGSC0003DMT400076966	Potato	mitochondrion	83.4	80.1
Solyc08g065220.2.1	Tomato	plastid	83.0	79.63
KRH61504	Soybean	mitochondrion	81.99	79.05
GSMUA_Achr3P26310_001	Banana	mitochondrion	78.37	78.93
KRH52197	Soybean	mitochondrion	81.19	78.89
KRH15534	Soybean	mitochondrion	83.8	78.66
AT2G26080.1	Thale cress	mitochondrion	82.29	78.35
KRH05459	Soybean	mitochondrion	83.2	78.31
AT4G33010.1	Thale cress	mitochondrion	81.19	77.82
TraesCS3A01G250200.1	Wheat	mitochondrion	79.58	76.72
TraesCS3B01G279700.1	Wheat	plastid	79.58	76.72
TraesCS3D01G250600.1	Wheat	mitochondrion	79.28	76.43
GSMUA_Achr1P14430_001	Banana	mitochondrion	74.95	76.25
KRH05426	Soybean	peroxisome	27.67	75.97
EES15687	Sorghum	mitochondrion	79.17	75.53
Bra011405.1-P	Field mustard	mitochondrion	79.07	75.22
VIT_04s0008g01300.t01	Wine grape	mitochondrion	80.48	74.98
Zm00001d023437_P001	Maize	mitochondrion	77.97	74.38
GSMUA_Achr8P05620_001	Banana	cytosol	5.63	52.34
CDY28279	Canola	cytosol	2.31	52.27

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ProteinID:CCB51449	ProteinID:CCB51449.1
UniProt:F6HGW6	EMBL:FN595756	InterPro:GDC_P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544
GO:GO:0006546	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	InterPro:GcvP	InterPro:IPR015421	InterPro:IPR015422	PFAM:PF02347	PANTHER:PTHR11773
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00461	UniParc:UPI0002108493
ArrayExpress:VIT_11s0016g02280	EnsemblPlantsGene:VIT_11s0016g02280	EnsemblPlants:VIT_11s0016g02280.t01	SEG:seg	:	:

Description

Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:F6HGW6]

Coordinates

chr11:+:1856283..1862252

Molecular Weight (calculated)

107498.0 Da

IEP (calculated)

7.514

GRAVY (calculated)

-0.131

Length

994 amino acids

Sequence
(BLAST)

001: MERARRLANR AILRRVVAES KRHLHISSSS PALVDSSSSF RSVSSMSLLR SHLILGSNVR NATGSGVGSQ LRSISVESLR PSDTFPRRHN SATPQEESSM
101: AETCGFSSLD ALIDATVPKS IRIGSMKFSK LDEGLTESQM IEHMNQLAAK NKTMVSDLTG LPMSNASLLD EGTAAAEAMA MCNNIQKGMK KTFLIANNCH
201: PQTIDVCKTR ADGFGLKVVT LDLKDFDYKS GDVCGVLVQY PGTEGEVLDY GEFIKKAHAN GVKVVMASDL LALTILKPPG ELGADIVVGS AQRFGVPMGY
301: GGPHAAFLAT SQEYKRMMPG RIIGVSVDSS GKPALRMAMQ TREQHIRRDK ATSNICTAQA LLANMSAMYA VYHGPEGLKT IAQRVHGLAA TFAYGLKKLG
401: TVDPQGIPFF DTVKIKCSDS RAIADAAYKK EMNLRILDSN TITVSFDETT TLEDVDKLFK VFSCGKPVTF TAASLAPEVD TMIPPGLVRE SSYLTHPIFN
501: SYHTEHELLR YIHRLQAKDL SLCHSMIPLG SCTMKLNATT EMMPVTWPSF ANIHPFAPID QAQGYQEMFN DLGELLCTIT GFDSFSLQPN AGAAGEYAGL
601: MVIRAYHLAR GDHHRNVCII PVSAHGTNPA SAAMCGMKIV AVGTDAKGNI NIKELRKAAE ANRDNLSALM VTYPSTHGVY EEGIDEICKI IHENGGQVYM
701: DGANMNAQVG LTSPGWIGAD VCHLNLHKTF CIPHGGGGPG MGPIGVKKHL APFLPAHPVV PTGGIPSSEN AQPLGTISAA PWGSALILPI SYTYIAMMGS
801: KGLTEASKIA ILKANYMAKR LEDHYPILFR GINGTVAHEF IIDLRGFKNT AGIEPEDVAK RLMDYGFHGP TMSWPVPGTL MIEPTESESK AELDRFCDAL
901: ISIREEIAQI EKGKADPNNN VLKGAPHPQS LLMQDAWTKP YSREYAAFPA SWLRAAKFWP STGRVDNVYG DRNLTCTLLS PSQAAEEQKA AATA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.