Factsheet for Zm00001d023437_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0711400-01	Rice	mitochondrion	29.37	95.03
Os06t0611900-01	Rice	mitochondrion	45.59	93.69
EES15687	Sorghum	mitochondrion	92.51	92.51
TraesCS3A01G250200.1	Wheat	mitochondrion	86.56	87.49
TraesCS3D01G250600.1	Wheat	mitochondrion	86.28	87.2
TraesCS3B01G279700.1	Wheat	plastid	86.18	87.1
HORVU3Hr1G067110.2	Barley	vacuole	83.88	84.69
GSMUA_Achr3P26310_001	Banana	mitochondrion	76.78	81.05
PGSC0003DMT400076966	Potato	mitochondrion	80.23	80.77
AT4G33010.1	Thale cress	mitochondrion	79.56	79.94
AT2G26080.1	Thale cress	mitochondrion	79.94	79.79
Solyc08g065220.2.1	Tomato	plastid	79.08	79.54
KRH61504	Soybean	mitochondrion	78.02	78.86
GSMUA_Achr1P14430_001	Banana	mitochondrion	73.61	78.51
KRH05459	Soybean	mitochondrion	79.46	78.41
KRH52197	Soybean	mitochondrion	76.87	78.3
KRH15534	Soybean	mitochondrion	79.46	78.19
VIT_11s0016g02280.t01	Wine grape	mitochondrion	74.38	77.97
Bra011405.1-P	Field mustard	mitochondrion	77.35	77.13
CDX75316	Canola	mitochondrion	77.26	77.11
CDX68930	Canola	mitochondrion	77.26	77.03
KRH05426	Soybean	peroxisome	25.72	74.03
VIT_04s0008g01300.t01	Wine grape	mitochondrion	74.09	72.35
CDY28279	Canola	cytosol	2.02	47.73

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EntrezGene:541946	ProteinID:AQK39319.1
ncoils:Coil	InterPro:GDC_P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544	GO:GO:0006546
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
InterPro:GcvP	InterPro:IPR015421	InterPro:IPR015422	UniProt:K7TIN2	HAMAP:MF_00711	PFAM:PF02347
PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	SignalP:SignalP-noTM
TIGRFAMs:TIGR00461	UniParc:UPI000221CC9C	EnsemblPlantsGene:Zm00001d023437	EnsemblPlants:Zm00001d023437_P001	EnsemblPlants:Zm00001d023437_T001	SEG:seg

Description

glycine decarboxylase1 glycine decarboxylase1

Coordinates

chr10:+:5599455..5606101

Molecular Weight (calculated)

112008.0 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.092

Length

1042 amino acids

Sequence
(BLAST)

0001: MERARRHASR ALLRRLLAAA AASPAASPAT SSRGISTLSP PPPAAGKQQR RCCPPPRGAH QHAQARAVSV SALQPSDTFP RRHNSATPAE QEAMASACGF
0101: GGVDALVDAT VPPAIRAPPM RFPGRFDAGF TESQMLDHMR RLASMNRDFK SFIGMGYYGT HVPAVVLRNL MENPAWYTQY TPYQAEIAQG RLESLLNYQT
0201: MVADLTGLPM SNASLLDEAT AAAEAMAMCS AILRGKKRTF LIASNCHPQT IDVCRTRSDG FGIRVVVADA KDLDYGGGDV CGVLVQYPGT EGEVLDYAEF
0301: VRDAHAHGVK VVMATDLLAL TALRPPGEIG ADIAVGSAQR FGVPMGYGGP HAAFLATSQE YKRLMPGRII GVSVDSTGRP ALRMAMQTRE QHIRRDKATS
0401: NICTAQALLA NMAAMYAVYH GPAGLKAIAD RVHGLAGTFA HGLKKLGTVT VQDLPFFDTV RVTCSDARAI AKEAVKNEMN LRVVDANTIT VAFDETSTLE
0501: DVDKLFKVFN NGKSASFTAE SIAPEVSSSI PSSLARESPY LTHPVFNMYH TEHELLRYLH KLQSKDLSLC HSMIPLGSCT MKLNATVEMI PVTFPNFANL
0601: HPFAPTDQAA GYHEMFDDLG NLLCTITGFD SFSLQPNAGA AGEYAGLMVI RAYHNSRGDH HRDVCIIPVS AHGTNPASAA MVGMKIVAVG TDAKGNINIE
0701: ELRKAAEANK DNLAALMVTY PSTHGVYEEG IDEICKIIHE NGGQVYMDGA NMNAQVGLTS PGFIGADVCH LNLHKTFCIP HGGGGPGMGP IGVKKHLAPF
0801: LPSHPVIPTG GFPLPEKTDP LGTISAAPWG SALILPISYT YIAMMGSQGL TDASKIAILN ANYMAKRLEK HYPVLFRGVN GTVAHEFIID LRAFKTTAGI
0901: EPEDVAKRLM DYGFHAPTMS WPVPGTLMIE PTESESKAEL DRFCDALISI REEIAEIESG KADVLNNVLK GAPHPPQLLM GDTWSKPYSR EYAAFPAAWL
1001: RGAKFWPTTG RVDNVYGDRN LICTLQQATQ VAEEAAAATA TA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.