CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 2
vacuole 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52197	Soybean	mitochondrion	94.18	94.92
Os01t0711400-01	Rice	mitochondrion	27.45	87.89
Os06t0611900-01	Rice	mitochondrion	42.68	86.78
KRH05459	Soybean	mitochondrion	86.32	84.28
KRH15534	Soybean	mitochondrion	86.52	84.23
PGSC0003DMT400076966	Potato	mitochondrion	83.03	82.71
VIT_11s0016g02280.t01	Wine grape	mitochondrion	79.05	81.99
GSMUA_Achr3P26310_001	Banana	mitochondrion	78.47	81.97
Solyc08g065220.2.1	Tomato	plastid	82.25	81.85
AT4G33010.1	Thale cress	mitochondrion	82.25	81.77
AT2G26080.1	Thale cress	mitochondrion	82.25	81.23
GSMUA_Achr1P14430_001	Banana	mitochondrion	75.85	80.04
TraesCS3A01G250200.1	Wheat	mitochondrion	79.83	79.83
TraesCS3D01G250600.1	Wheat	mitochondrion	79.53	79.53
TraesCS3B01G279700.1	Wheat	plastid	79.44	79.44
EES15687	Sorghum	mitochondrion	80.12	79.27
Bra011405.1-P	Field mustard	mitochondrion	79.63	78.56
Zm00001d023437_P001	Maize	mitochondrion	78.86	78.02
KRH05426	Soybean	peroxisome	26.96	76.8
VIT_04s0008g01300.t01	Wine grape	mitochondrion	79.44	76.76
HORVU3Hr1G051040.1	Barley	mitochondrion, peroxisome	6.11	72.41
CDY28279	Canola	cytosol	2.23	52.27
GSMUA_Achr8P05620_001	Banana	cytosol	5.33	51.4

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	EntrezGene:100795673	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02002171
ncoils:Coil	InterPro:GDC_P	EnsemblPlantsGene:GLYMA_04G051200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544
GO:GO:0006546	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	InterPro:GcvP	UniProt:I1JTW7	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH61504
ProteinID:KRH61504	ProteinID:KRH61504.1	HAMAP:MF_00711	PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00461	UniParc:UPI000233968C	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:4154435..4160517

Molecular Weight (calculated)

111992.0 Da

IEP (calculated)

7.380

GRAVY (calculated)

-0.145

Length

1031 amino acids

Sequence
(BLAST)

0001: MERARRLANK AILKRLISSA KVNSHSRSLS SISHSFSLPK PENPIGNNRK LSHNVPSRFI SLDALKPSDT FPRRHNSATS EEQSKMAQTC GFDSLDSLID
0101: ATVPKSIRLN DMSFSVFNEG LTESEMSSHM NSLASKNKCF KSYIGMGYYN THVPPVILRN IMENPAWYTQ YTPYQAEISQ GRLESLMNFQ TMISDLTALP
0201: MSNASLLDEG TAAAEAMSMC NNIHKGKRKT FIIASNCHPQ TVDVCITRAS GFGIKVVTAD VKDVDYKSGD VCGVLVQYPG TEGEILDYGE FVEEAHAHGV
0301: KVVMGTDLLA LTVLKPPGEM GVDIVVGSAQ RFGVPMGYGG PHAAFLATSQ EYKRMMPGRI IGVSVDSSGK PALRMAMQTR EQHIRRDKAT SNICTAQALL
0401: ANMAAMYAVY HGPEGLKTIA QRVHGLAGVF AQGLKKLGTV EVQDHPFFDT VKIRTANAHA IADAACKNEI NLRVVDGNTI TVAFDETTTL EDVDNLFKVF
0501: SNGKPVSFTA ASLAPEVQTA LPSGLTRKSP YLTHPIFNTY HTEHELLRYI HRLQSKDLSL CHSMIPLGSC TMKLNATTEM MPVTWPSFAN IHPFAPIEQA
0601: QGYQEMFENL GKLLCTITGF DSFSLQPNAG AAGEYAGLMV IRAYHLARGD HHRNVCIIPV SAHGTNPASA AMCAMKIVSV GTDAKGNINI DELRKAAETH
0701: KDNLAALMVT YPSTHGVYEE GIDEICKIIH DNGGQVYMDG ANMNAQVGLT SPGWIGADVC HLNLHKTFCI PHGGGGPGMG PIGVKKHLAP FLPSHPVVPT
0801: GGIPAPGKSQ PLGTISAAPW GSALILPISY SYIAMMGSKG LTEASKTAIL NANYMAKRLE NHYPVLFRGV NGTVAHEFII DLRGFKNTAG IEPEDVAKRL
0901: MDYGFHSPTM SFPVPGTLMI EPTESESKAE LDRFCDALIS IRQEIAEIEK GKADINNNVL KCAPHPPSVL MGDAWTKPYS REYAAFPASW LRVSKFWPST
1001: GRIDNVYGDR NLVCTLLPTS QVVEEQAAAT A

Best Arabidopsis Sequence Match ( AT4G33010.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNDT KRHRNAETPH LVPHAPARYV SSLSPFISTP RSVNHTAAFG RHQQTRSISV DAVKPSDTFP RRHNSATPDE QTHMAKFCGF
0101: DHIDSLIDAT VPKSIRLDSM KFSKFDAGLT ESQMIQHMVD LASKNKVFKS FIGMGYYNTH VPTVILRNIM ENPAWYTQYT PYQAEISQGR LESLLNFQTV
0201: ITDLTGLPMS NASLLDEGTA AAEAMAMCNN ILKGKKKTFV IASNCHPQTI DVCKTRADGF DLKVVTSDLK DIDYSSGDVC GVLVQYPGTE GEVLDYAEFV
0301: KNAHANGVKV VMATDLLALT VLKPPGEFGA DIVVGSAQRF GVPMGYGGPH AAFLATSQEY KRMMPGRIIG ISVDSSGKQA LRMAMQTREQ HIRRDKATSN
0401: ICTAQALLAN MAAMYAVYHG PAGLKSIAQR VHGLAGIFSL GLNKLGVAEV QELPFFDTVK IKCSDAHAIA DAASKSEINL RVVDSTTITA SFDETTTLDD
0501: VDKLFKVFAS GKPVPFTAES LAPEVQNSIP SSLTRESPYL THPIFNMYHT EHELLRYIHK LQSKDLSLCH SMIPLGSCTM KLNATTEMMP VTWPSFTDIH
0601: PFAPVEQAQG YQEMFENLGD LLCTITGFDS FSLQPNAGAA GEYAGLMVIR AYHMSRGDHH RNVCIIPVSA HGTNPASAAM CGMKIITVGT DAKGNINIEE
0701: VRKAAEANKD NLAALMVTYP STHGVYEEGI DEICNIIHEN GGQVYMDGAN MNAQVGLTSP GFIGADVCHL NLHKTFCIPH GGGGPGMGPI GVKNHLAPFL
0801: PSHPVIPTGG IPQPEKTAPL GAISAAPWGS ALILPISYTY IAMMGSGGLT DASKIAILNA NYMAKRLEKH YPVLFRGVNG TVAHEFIIDL RGFKNTAGIE
0901: PEDVAKRLMD YGFHGPTMSW PVPGTLMIEP TESESKAELD RFCDALISIR EEIAQIEKGN ADVQNNVLKG APHPPSLLMA DTWKKPYSRE YAAFPAPWLR
1001: SSKFWPTTGR VDNVYGDRKL VCTLLPEEEQ VAAAVSA

Arabidopsis Description

GLDP1Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:A0A178UTF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.