Factsheet for PGSC0003DMT400076966

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065220.2.1	Tomato	plastid	96.23	96.14
Os06t0611900-01	Rice	mitochondrion	43.0	87.77
Os01t0711400-01	Rice	mitochondrion	27.25	87.58
AT4G33010.1	Thale cress	mitochondrion	85.8	85.63
AT2G26080.1	Thale cress	mitochondrion	84.73	84.0
KRH05459	Soybean	mitochondrion	85.7	84.0
KRH15534	Soybean	mitochondrion	85.51	83.57
GSMUA_Achr3P26310_001	Banana	mitochondrion	79.61	83.49
VIT_11s0016g02280.t01	Wine grape	mitochondrion	80.1	83.4
KRH61504	Soybean	mitochondrion	82.71	83.03
KRH52197	Soybean	mitochondrion	81.84	82.8
Bra011405.1-P	Field mustard	mitochondrion	82.71	81.91
TraesCS3A01G250200.1	Wheat	mitochondrion	80.39	80.7
TraesCS3B01G279700.1	Wheat	plastid	80.39	80.7
TraesCS3D01G250600.1	Wheat	mitochondrion	80.39	80.7
GSMUA_Achr1P14430_001	Banana	mitochondrion	76.04	80.55
EES15687	Sorghum	mitochondrion	80.87	80.33
Zm00001d023437_P001	Maize	mitochondrion	80.77	80.23
HORVU3Hr1G051040.1	Barley	mitochondrion, peroxisome	6.47	77.01
KRH05426	Soybean	peroxisome	26.47	75.69
CDY28279	Canola	cytosol	2.22	52.27
GSMUA_Achr8P05620_001	Banana	cytosol	5.12	49.53

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ProteinID:CAB16918	ProteinID:CAB16918.1
ncoils:Coil	InterPro:GDC_P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544	GO:GO:0006546
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
InterPro:GcvP	InterPro:IPR015421	InterPro:IPR015422	UniProt:M1CXP4	HAMAP:MF_00711	PFAM:PF02347
EnsemblPlantsGene:PGSC0003DMG400029938	PGSC:PGSC0003DMG400029938	EnsemblPlants:PGSC0003DMT400076966	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00461	UniParc:UPI000294E066	EMBL:Z99770	SEG:seg

Description

Glycine dehydrogenase [decarboxylating], mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400029938]

Coordinates

chr8:+:36036442..36043558

Molecular Weight (calculated)

112907.0 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.175

Length

1035 amino acids

Sequence
(BLAST)

0001: MERARKLANR AILKRLVSQS KQSRSNEIPS SSLYWPSRYV SSLSPYTFQA RNNAKSFNTQ QARSISVEAL KPSDTFPRRH NSATPEEQTK MAEFCGFQSL
0101: DALIDATVPQ SIRSESMKLP KFDGGLTESQ MIDHMQKLAS KNKVFKSYIG MGYYNTYVPP VILRNLLENP AWYTQYTPYQ AEISQGRLES LLNYQTMITD
0201: LTGLPMSNAS LLDEGTAAAE AMAMCNNILK GKKKTFLIAS NCHPQTIDIC KTRADGFDLK VVTVDLKDID YKSGDVCGVL VQYPGTEGEI LDYGEFIKNA
0301: HAHGVKVVMA SDLLALTMLK PPGELGADIV VGSAQRFGVP MGYGGPHAAF LATSQEYKRM MPGRIIGVSV DSTGKPALRM AMQTREQHIR RDKATSNICT
0401: AQALLANMAA MYAVYHGPEG LKTIGQRVHG LAGTFSAGLK KLGTVEVQDL PFFDTVKVKC SDAKAIADVA NKNDINLRIV DNNTITVSFD ETTTLEDVDD
0501: LFKVFALGKP VPFTAQSIAQ EVENLIPSGL TRETPFLTHQ IFNSYHTEHE LLRYLHKLQS KDLSLCHSMI PLGSCTMKLN ATTEMMPVTW PSFANIHPFA
0601: PTEQAAGYQE MFDDLGALLC TITGFDSFSL QPNAGAAGEY AGLMVIRAYH MSRGDHHRNV CIIPVSAHGT NPASAAMCGM KIVAVGTDAK GNINIEELRK
0701: AAEANKDNLA ALMVTYPSTH GVYEEGIDEI CKIIHDNGGQ VYMDGANMNA QVGLTSPGFI GADVCHLNLH KTFCIPHGGG GPGMGPIGVK KHLAPYLPSH
0801: PVVPTGGIPS PDKSEPLGAI SAAPWGSALI LPISYTYIAM MGSKGLTDAS KIAILSANYM AKRLEKHYPV LFRGVNGTCA HEFIIDLRGF KNTAGIEPED
0901: VAKRLIDYGF HGPTMSWPVP GTLMIEPTES ESKAELDRFC DALISIREEI AQIEKGNVDI NNNVLKGAPH PPSMLMADAW TKPYSREYAA YPAPWLRSAK
1001: FWPTTGRVDN VYGDRNLICT LLPVSEMAEE KAATA

Best Arabidopsis Sequence Match ( AT4G33010.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNDT KRHRNAETPH LVPHAPARYV SSLSPFISTP RSVNHTAAFG RHQQTRSISV DAVKPSDTFP RRHNSATPDE QTHMAKFCGF
0101: DHIDSLIDAT VPKSIRLDSM KFSKFDAGLT ESQMIQHMVD LASKNKVFKS FIGMGYYNTH VPTVILRNIM ENPAWYTQYT PYQAEISQGR LESLLNFQTV
0201: ITDLTGLPMS NASLLDEGTA AAEAMAMCNN ILKGKKKTFV IASNCHPQTI DVCKTRADGF DLKVVTSDLK DIDYSSGDVC GVLVQYPGTE GEVLDYAEFV
0301: KNAHANGVKV VMATDLLALT VLKPPGEFGA DIVVGSAQRF GVPMGYGGPH AAFLATSQEY KRMMPGRIIG ISVDSSGKQA LRMAMQTREQ HIRRDKATSN
0401: ICTAQALLAN MAAMYAVYHG PAGLKSIAQR VHGLAGIFSL GLNKLGVAEV QELPFFDTVK IKCSDAHAIA DAASKSEINL RVVDSTTITA SFDETTTLDD
0501: VDKLFKVFAS GKPVPFTAES LAPEVQNSIP SSLTRESPYL THPIFNMYHT EHELLRYIHK LQSKDLSLCH SMIPLGSCTM KLNATTEMMP VTWPSFTDIH
0601: PFAPVEQAQG YQEMFENLGD LLCTITGFDS FSLQPNAGAA GEYAGLMVIR AYHMSRGDHH RNVCIIPVSA HGTNPASAAM CGMKIITVGT DAKGNINIEE
0701: VRKAAEANKD NLAALMVTYP STHGVYEEGI DEICNIIHEN GGQVYMDGAN MNAQVGLTSP GFIGADVCHL NLHKTFCIPH GGGGPGMGPI GVKNHLAPFL
0801: PSHPVIPTGG IPQPEKTAPL GAISAAPWGS ALILPISYTY IAMMGSGGLT DASKIAILNA NYMAKRLEKH YPVLFRGVNG TVAHEFIIDL RGFKNTAGIE
0901: PEDVAKRLMD YGFHGPTMSW PVPGTLMIEP TESESKAELD RFCDALISIR EEIAQIEKGN ADVQNNVLKG APHPPSLLMA DTWKKPYSRE YAAFPAPWLR
1001: SSKFWPTTGR VDNVYGDRKL VCTLLPEEEQ VAAAVSA

Arabidopsis Description

GLDP1Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:A0A178UTF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.