Factsheet for TraesCS3B01G279700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G250600.1	Wheat	mitochondrion	99.52	99.52
TraesCS3A01G250200.1	Wheat	mitochondrion	99.42	99.42
Os01t0711400-01	Rice	mitochondrion	29.68	95.03
Os06t0611900-01	Rice	mitochondrion	46.07	93.69
HORVU3Hr1G067110.2	Barley	vacuole	93.21	93.12
EES15687	Sorghum	mitochondrion	89.62	88.68
Zm00001d023437_P001	Maize	mitochondrion	87.1	86.18
GSMUA_Achr3P26310_001	Banana	mitochondrion	77.79	81.26
AT4G33010.1	Thale cress	mitochondrion	81.09	80.62
PGSC0003DMT400076966	Potato	mitochondrion	80.7	80.39
AT2G26080.1	Thale cress	mitochondrion	81.18	80.17
Solyc08g065220.2.1	Tomato	plastid	80.5	80.12
KRH52197	Soybean	mitochondrion	79.15	79.77
KRH05459	Soybean	mitochondrion	81.67	79.73
VIT_11s0016g02280.t01	Wine grape	mitochondrion	76.72	79.58
KRH61504	Soybean	mitochondrion	79.44	79.44
KRH15534	Soybean	mitochondrion	81.47	79.32
GSMUA_Achr1P14430_001	Banana	mitochondrion	74.2	78.3
CDX75316	Canola	mitochondrion	78.66	77.68
Bra011405.1-P	Field mustard	mitochondrion	78.66	77.61
CDX68930	Canola	mitochondrion	78.37	77.32
KRH05426	Soybean	peroxisome	25.8	73.48
VIT_04s0008g01300.t01	Wine grape	mitochondrion	75.95	73.38
CDY28279	Canola	cytosol	2.13	50.0

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ncoils:Coil	InterPro:GDC_P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004375	GO:GO:0006544	GO:GO:0006546	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0055114	InterPro:GcvP	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00711	PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	SignalP:SignalP-noTM	TIGRFAMs:TIGR00461	EnsemblPlantsGene:TraesCS3B01G279700	EnsemblPlants:TraesCS3B01G279700.1
TIGR:cd00613	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:449281843..449287597

Molecular Weight (calculated)

111051.0 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.094

Length

1031 amino acids

Sequence
(BLAST)

0001: MERARRLASR ALLRRLLAAS SSATSPAPSR GVSTLAPKPA AGSRPRARPA HQYTPGRPVS VSALQPSDTF PRRHNSATPA EQAVMASECG FNTLDALIDA
0101: TVPAAIRAPP MQFTGKFDAG FTESQMLEHM AHLASMNKTY KSFIGMGYYN THIPAVILRN LMENPAWYTQ YTPYQAEIAQ GRLESLLNYQ TMVADLTGLP
0201: MSNASLLDEA TAAAEAMAMC LGIVKSKKKT FLIASNCHPQ TIDICQTRAT GFDINVVVSA AKDFDYSSGD VCGVLVQYPG TEGEVLDYAE FVKDAHAHGV
0301: KVVMATDLLA LTTLRPPGEI GADIAVGSAQ RFGVPMGYGG PHAAFLATSQ EYKRLMPGRI IGVSVDSSGK PALRMAMQTR EQHIRRDKAT SNICTAQALL
0401: ANMAAMYAVY HGPAGLKAIA DRVHGLAGTF AHGLKKLGTV TVQELPYFDT VKITCADANA IAEEARKSEM NLRVVDANTI TVAFDETTTL EDVDKLFKVF
0501: SGGKPVDFTA ESIAPEVSSS IPPSLVRDSP YLTHPIFSMY HTEHELLRYL HKLQSKDLSL CHSMIPLGSC TMKLNATVEM MPVTDPKFAN MHPFAPIDQA
0601: AGYHEMFDNL GDLLNTITGF DSFSLQPNAG ASGEYAGLMV IRAYHKARGD HHRNVCIIPV SAHGTNPASA AMCGMKIVAV GTDAKGNINI EELRKAAEAN
0701: KDNLSALMVT YPSTHGVYEE GIDEICRIIH ENGGQVYMDG ANMNAQVGLT SPGFIGADVC HLNLHKTFCI PHGGGGPGMG PIGVKKHLAP FLPSHPVIPT
0801: GGFPLPEKTD PLGSISAAPW GSALILPISY TYIAMMGSQG LTEASKIAIL NANYMAKRLE KHYPVLFRGV NGTVAHEFII DLRGFKATAG IEPEDVAKRL
0901: MDYGFHGPTM SWPVPGTLMI EPTESESKAE LDRFCDALIS IREEIAQVEN GKADAHNNVL KGAPHPPQLL MGDAWTKPYS REYAAFPAAW LRGAKFWPTT
1001: CRVDNVYGDR NLICTLQQAS QVAEEAAAAT A

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.