Factsheet for TraesCS3A01G250200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 21043471
plastid: 28542341

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G279700.1	Wheat	plastid	99.42	99.42
TraesCS3D01G250600.1	Wheat	mitochondrion	99.32	99.32
Os01t0711400-01	Rice	mitochondrion	29.58	94.72
Os06t0611900-01	Rice	mitochondrion	45.97	93.49
HORVU3Hr1G067110.2	Barley	vacuole	92.82	92.73
EES15687	Sorghum	mitochondrion	90.01	89.06
Zm00001d023437_P001	Maize	mitochondrion	87.49	86.56
GSMUA_Achr3P26310_001	Banana	mitochondrion	77.98	81.46
AT4G33010.1	Thale cress	mitochondrion	80.89	80.42
PGSC0003DMT400076966	Potato	mitochondrion	80.7	80.39
AT2G26080.1	Thale cress	mitochondrion	81.18	80.17
Solyc08g065220.2.1	Tomato	plastid	80.5	80.12
KRH52197	Soybean	mitochondrion	79.24	79.86
KRH61504	Soybean	mitochondrion	79.83	79.83
KRH05459	Soybean	mitochondrion	81.57	79.64
VIT_11s0016g02280.t01	Wine grape	mitochondrion	76.72	79.58
KRH15534	Soybean	mitochondrion	81.38	79.23
GSMUA_Achr1P14430_001	Banana	mitochondrion	74.49	78.61
CDX75316	Canola	mitochondrion	78.47	77.49
Bra011405.1-P	Field mustard	mitochondrion	78.47	77.42
CDX68930	Canola	mitochondrion	78.18	77.13
KRH05426	Soybean	peroxisome	26.09	74.31
VIT_04s0008g01300.t01	Wine grape	mitochondrion	75.75	73.2
CDY28279	Canola	cytosol	2.13	50.0

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ncoils:Coil	InterPro:GDC_P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004375	GO:GO:0006544	GO:GO:0006546	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0055114	InterPro:GcvP	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00711	PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	SignalP:SignalP-noTM	TIGRFAMs:TIGR00461	EnsemblPlantsGene:TraesCS3A01G250200	EnsemblPlants:TraesCS3A01G250200.1
TIGR:cd00613	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:468582864..468588488

Molecular Weight (calculated)

111079.0 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.097

Length

1031 amino acids

Sequence
(BLAST)

0001: MERARRLASR ALLRRLLAAS SSATSPAPSR GVSTLAPKPA AGSRPRARPA HQYTPGRPVS VSALQPSDTF PRRHNSATPA EQAVMASECG FNTLDALIDA
0101: TVPAAIRAPP MQFTGKFDAG FTESQMLEHM AHLASMNKTY KSFIGMGYYN THIPAVILRN LMENPAWYTQ YTPYQAEIAQ GRLESLLNYQ TMVADLTGLP
0201: MSNASLLDEA TAAAEAMAMC LGIVKSKKKT FLIASNCHPQ TIDICQTRAT GFDINVVVSA AKDFDYSSGD VCGVLVQYPG TEGEVLDYAE FVKDAHAHGV
0301: KVVMATDLLA LTTLRPPGEI GADIAVGSAQ RFGVPMGYGG PHAAFLATSQ EYKRLMPGRI IGVSVDSSGK PALRMAMQTR EQHIRRDKAT SNICTAQALL
0401: ANMAAMYAVY HGPAGLKAIA DRVHGLAGTF AHGLKKLGTV TVQELPYFDT VKITCADANA IAEEARKNEM NLRVVDANTI TVAFDETTTL EDVDKLFKVF
0501: SGGKPVDFTA ESIAPEVSSS IPPSLVRDSP YLTHPIFSMY HTEHELLRYL HKLQSKDLSL CHSMIPLGSC TMKLNATVEM MPVTDPKFAN MHPFAPIDQA
0601: AGYHEMFDNL GDLLNTITGF DSFSLQPNAG ASGEYAGLMV IRAYHKARGD HHRNVCIIPV SAHGTNPASA AMCGMKIVAV GTDAKGNINI EELRKAAEAN
0701: KDNLSALMVT YPSTHGVYEE GIDEICRIIH ENGGQVYMDG ANMNAQVGLT SPGFIGADVC HLNLHKTFCI PHGGGGPGMG PIGVKKHLAP FLPSHPVIPT
0801: GGFPLPEKTD PLGSISAAPW GSALILPISY TYIAMMGSQG LTEASKIAIL NANYMAKRLE KHYPVLFRGV NGTVAHEFII DLRGFKATAG IEPEDVAKRL
0901: MDYGFHGPTM SWPVPGTLMI EPTESESKAE LDRFCDALIS IREEIAEVEN GKADAHNNVL KGAPHPPQLL MGDAWTKPYS REYAAFPAAW LRGAKFWPTT
1001: CRVDNVYGDR NLICTLQQAS QVAEEAAAAT A

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.