Factsheet for Os06t0611900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
vacuole 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 16443157
mitochondrion: 19010998
mitochondrion: 23027867
extracellular: 23159799

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 16443157 doi

IM Møller, BK Kristensen

Department of Agricultural Sciences, The Royal Veterinary and Agricultural University, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0711400-01	Rice	mitochondrion	63.12	99.38
KRH05426	Soybean	peroxisome	53.45	74.86
CDY28279	Canola	cytosol	4.34	50.0
TraesCS3D01G250600.1	Wheat	mitochondrion	93.69	46.07
TraesCS3B01G279700.1	Wheat	plastid	93.69	46.07
TraesCS3A01G250200.1	Wheat	mitochondrion	93.49	45.97
EES15687	Sorghum	mitochondrion	94.28	45.87
Zm00001d023437_P001	Maize	mitochondrion	93.69	45.59
GSMUA_Achr3P26310_001	Banana	mitochondrion	88.56	45.49
GSMUA_Achr1P14430_001	Banana	mitochondrion	86.78	45.04
VIT_11s0016g02280.t01	Wine grape	mitochondrion	87.18	44.47
HORVU3Hr1G067110.2	Barley	vacuole	89.74	44.09
PGSC0003DMT400076966	Potato	mitochondrion	87.77	43.0
AT4G33010.1	Thale cress	mitochondrion	87.38	42.72
KRH05459	Soybean	mitochondrion	88.95	42.71
KRH61504	Soybean	mitochondrion	86.78	42.68
Solyc08g065220.2.1	Tomato	plastid	87.18	42.66
AT2G26080.1	Thale cress	mitochondrion	87.77	42.62
KRH52197	Soybean	mitochondrion	86.0	42.62
KRH15534	Soybean	mitochondrion	88.76	42.49
CDX75316	Canola	mitochondrion	84.22	40.9
Bra011405.1-P	Field mustard	mitochondrion	84.22	40.86
CDX68930	Canola	mitochondrion	84.02	40.77
VIT_04s0008g01300.t01	Wine grape	mitochondrion	78.7	37.39

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A0A0P0WYZ5	ProteinID:BAS98598.1
ncoils:Coil	InterPro:GDC_P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544	GO:GO:0006546
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
InterPro:IPR015421	InterPro:IPR015422	EnsemblPlantsGene:Os06g0611900	EnsemblPlants:Os06t0611900-01	PFAM:PF02347	PANTHER:PTHR11773
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00039389A6	SEG:seg

Description

Similar to Glycine decarboxylase P subunit. (Os06t0611900-01);Similar to Victorin binding protein. (Os06t0611900-02)

Coordinates

chr6:-:24399546..24404035

Molecular Weight (calculated)

55242.5 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.110

Length

507 amino acids

Sequence
(BLAST)

001: LVRKSPYLTH PIFNMYHTEH ELLRYLYKLQ SKDLSLCHSM IPLGSCTMKL NATVEMMPVT YPNFANMHPF APTDQAAGYH EMFDDLGDLL CKITGFDSFS
101: LQPNAGASGE YAGLMVIRAY HRARGDYHRD VCIIPVSAHG TNPASAAMCG MKIVAVGTDS KGNINIEELR KAAEANKDNL AALMVTYPST HGVYEEGIDE
201: ICMIIHENGG QVYMDGANMN AQVGLTSPGF IGADVCHLNL HKTFCIPHGG GGPGMGPIGV KKHLAPFLPS HPVITTGGFP LPEKTDPLGT ISAAPWGSAL
301: ILPISYTYIA MMGSKGLTDA SKIAILNANY MTKRLEKHYP VLFRGVNGTV AHEFIIDLRG FKTTAGIEPE DVAKRLMDYG FHAPTMSWPV PGTLMIEPTE
401: SESKAELDRF CDALISIREE IAEIESGKAD VNNNVLKSAP HPPQLLMSDS WTKPYSREYA AFPAAWLRGA KFWPTTCRVD NVYGDRNLIC TLQQGSQVAE
501: EAAAATA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.