CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
vacuole 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15534	Soybean	mitochondrion	95.27	95.0
Os01t0711400-01	Rice	mitochondrion	27.56	90.37
Os06t0611900-01	Rice	mitochondrion	42.71	88.95
KRH61504	Soybean	mitochondrion	84.28	86.32
KRH52197	Soybean	mitochondrion	83.62	86.31
PGSC0003DMT400076966	Potato	mitochondrion	84.0	85.7
Solyc08g065220.2.1	Tomato	plastid	84.0	85.62
AT4G33010.1	Thale cress	mitochondrion	83.05	84.57
AT2G26080.1	Thale cress	mitochondrion	83.33	84.29
GSMUA_Achr3P26310_001	Banana	mitochondrion	78.41	83.89
VIT_11s0016g02280.t01	Wine grape	mitochondrion	78.31	83.2
TraesCS3B01G279700.1	Wheat	plastid	79.73	81.67
Bra011405.1-P	Field mustard	mitochondrion	80.78	81.63
TraesCS3A01G250200.1	Wheat	mitochondrion	79.64	81.57
KRH05426	Soybean	peroxisome	27.94	81.49
TraesCS3D01G250600.1	Wheat	mitochondrion	79.55	81.47
GSMUA_Achr1P14430_001	Banana	mitochondrion	74.91	80.96
EES15687	Sorghum	mitochondrion	79.26	80.33
VIT_04s0008g01300.t01	Wine grape	mitochondrion	80.49	79.66
Zm00001d023437_P001	Maize	mitochondrion	78.41	79.46
HORVU3Hr1G051040.1	Barley	mitochondrion, peroxisome	6.25	75.86
CDY28279	Canola	cytosol	2.18	52.27
GSMUA_Achr8P05620_001	Banana	cytosol	5.21	51.4

Protein Annotations

KEGG:00260+1.4.4.2	MapMan:1.3.4.1	EntrezGene:100777528	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02010746
ncoils:Coil	InterPro:GDC_P	EnsemblPlantsGene:GLYMA_17G228800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004375
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006544
GO:GO:0006546	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	InterPro:GcvP	UniProt:I1MXB1	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH05459
ProteinID:KRH05459	ProteinID:KRH05459.1	HAMAP:MF_00711	PFAM:PF02347	PANTHER:PTHR11773	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00461	UniParc:UPI000233E3AA	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:38383184..38389776

Molecular Weight (calculated)

114627.0 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.132

Length

1056 amino acids

Sequence
(BLAST)

0001: MERARRLANR AILRRLVSEA KQHQKNESVL HSSTTPILLY SSSRCMSSVS SPVLRSRGSK TETLLGRNMN ISRSVVAGAG SARSISVEAL QPSDTFPRRH
0101: NSATPEEQSK MAESIGFESL DSLVDATVPK SIRLKEMTFG KFDAGLTESQ MIEHMKDLAS KNKVFKSYIG MGYYNTHVPP VILRNIMENP AWYTQYTPYQ
0201: AEISQGRLES LLNYQTMITD LTGLPMSNAS LLDEGTAAAE AMSMCNNIQK GKKKTFIIAS NCHPQTIDIC KTRADGFDLK VVTADLKDID YKSGDVCGVL
0301: VQYPGTEGEV LDYGEFVKKA HAHEVKVVMA SDLLALTVLK PPGEFGADIV VGSAQRFGVP MGYGGPHAAF LATSQEYKRM MPGRIIGVSV DSSGKTALRM
0401: AMQTREQHIR RDKATSNICT AQALLANMAA MYAVYHGPEG LKNIAHRVHG LAGAFALGLK KLGTVEVQDL PFFDTVKVKT SNAHAIADAA LKSGINLRVV
0501: DGNTITVAFD ETTTLEDVDN LFKVFAGGKP VPFTAASLAP EVQSAIPSGL VRKSPYLTHS IFNMYQTEHE LLRYLYKLQS KDLSLCHSMI PLGSCTMKLN
0601: ATTEMMPVTW PSFTDIHPFA PVDQAQGYQE MFNNLGELLC TITGFDSFSL QPNAGAAGEY AGLMVIRAYH LARGDHHRNV CIIPVSAHGT NPASAAMCGM
0701: KIVSVGTDAK GNINIEELRK AAETHKDNLS ALMVTYPSTH GVYEEGIDEI CKIIHDNGGQ VYMDGANMNA QVGLTSPGWI GADVCHLNLH KTFCIPHGGG
0801: GPGMGPIGVK KHLAPFLPSH PVIATGGIPA PDKPQPLGTI AAAPWGSALI LPISYTYIAM MGSKGLTDAS KIAILNANYM AKRLENYYPV LFRGVNGTVA
0901: HEFIIDLRGF KNTAGIEPED VAKRLMDYGF HAPTMSWPVP GTLMIEPTES ESKAELDRFC DALISIRQEI AEIEKGNADI NNNVLKSAPH PPSLLMADAW
1001: TKPYSREYAA FPAPWLRASK FWPTTGRVDN VYGDRNLICT LLPASQAVEE QAAATA

Best Arabidopsis Sequence Match ( AT2G26080.1 )
(BLAST)

0001: MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF TTSGRNQHQT RSISVDALKP SDTFPRRHNS ATPDEQAQMA
0101: NYCGFDNLNT LIDSTVPKSI RLDSMKFSGI FDEGLTESQM IEHMSDLASK NKVFKSFIGM GYYNTHVPPV ILRNIMENPA WYTQYTPYQA EISQGRLESL
0201: LNYQTVITDL TGLPMSNASL LDEGTAAAEA MAMCNNILKG KKKTFVIASN CHPQTIDVCK TRADGFDLKV VTVDIKDVDY SSGDVCGVLV QYPGTEGEVL
0301: DYGEFVKNAH ANGVKVVMAT DLLALTMLKP PGEFGADIVV GSGQRFGVPM GYGGPHAAFL ATSQEYKRMM PGRIIGVSVD SSGKQALRMA MQTREQHIRR
0401: DKATSNICTA QALLANMTAM YAVYHGPEGL KSIAQRVHGL AGVFALGLKK LGTAQVQDLP FFDTVKVTCS DATAIFDVAA KKEINLRLVD SNTITVAFDE
0501: TTTLDDVDKL FEVFASGKPV QFTAESLAPE FNNAIPSSLT RESPYLTHPI FNMYHTEHEL LRYIHKLQNK DLSLCHSMIP LGSCTMKLNA TTEMMPVTWP
0601: SFTNMHPFAP VEQAQGYQEM FTNLGELLCT ITGFDSFSLQ PNAGAAGEYA GLMVIRAYHM SRGDHHRNVC IIPVSAHGTN PASAAMCGMK IVAVGTDAKG
0701: NINIEELRNA AEANKDNLAA LMVTYPSTHG VYEEGIDEIC NIIHENGGQV YMDGANMNAQ VGLTSPGFIG ADVCHLNLHK TFCIPHGGGG PGMGPIGVKQ
0801: HLAPFLPSHP VIPTGGIPEP EQTSPLGTIS AAPWGSALIL PISYTYIAMM GSGGLTDASK IAILNANYMA KRLESHYPVL FRGVNGTVAH EFIIDLRGFK
0901: NTAGIEPEDV AKRLMDYGFH GPTMSWPVPG TLMIEPTESE SKAELDRFCD ALISIREEIS QIEKGNADPN NNVLKGAPHP PSLLMADTWK KPYSREYAAF
1001: PAPWLRSSKF WPTTGRVDNV YGDRNLVCTL QPANEEQAAA AVSA

Arabidopsis Description

GLDP2Glycine dehydrogenase (decarboxylating) 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80988]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.