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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • mitochondrion 8
  • plastid 2
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid, vacuole
BaCelLo:mitochondrion
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400076966 Potato mitochondrion 96.14 96.23
Os01t0711400-01 Rice mitochondrion 27.12 87.27
Os06t0611900-01 Rice mitochondrion 42.66 87.18
KRH05459 Soybean mitochondrion 85.62 84.0
AT4G33010.1 Thale cress mitochondrion 83.88 83.8
KRH15534 Soybean mitochondrion 85.42 83.57
AT2G26080.1 Thale cress mitochondrion 84.17 83.52
GSMUA_Achr3P26310_001 Banana mitochondrion 79.25 83.18
VIT_11s0016g02280.t01 Wine grape mitochondrion 79.63 83.0
KRH52197 Soybean mitochondrion 81.47 82.5
KRH61504 Soybean mitochondrion 81.85 82.25
TraesCS3A01G250200.1 Wheat mitochondrion 80.12 80.5
TraesCS3B01G279700.1 Wheat plastid 80.12 80.5
Bra011405.1-P Field mustard mitochondrion 81.18 80.48
GSMUA_Achr1P14430_001 Banana mitochondrion 75.87 80.45
TraesCS3D01G250600.1 Wheat mitochondrion 79.92 80.31
EES15687 Sorghum mitochondrion 80.02 79.56
Zm00001d023437_P001 Maize mitochondrion 79.54 79.08
HORVU3Hr1G051040.1 Barley mitochondrion, peroxisome 6.47 77.01
KRH05426 Soybean peroxisome 26.45 75.69
CDY28279 Canola cytosol 2.22 52.27
GSMUA_Achr8P05620_001 Banana cytosol 5.12 49.53
Protein Annotations
KEGG:00260+1.4.4.2MapMan:1.3.4.1Gene3D:3.40.640.10Gene3D:3.90.1150.10ncoils:CoilInterPro:GDC_P
GO:GO:0003674GO:GO:0003824GO:GO:0004375GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0006544GO:GO:0006546GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987GO:GO:0016491GO:GO:0055114InterPro:GcvPInterPro:IPR015421
InterPro:IPR015422UniProt:K4CLA3HAMAP:MF_00711PFAM:PF02347PANTHER:PTHR11773InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383EnsemblPlantsGene:Solyc08g065220.2EnsemblPlants:Solyc08g065220.2.1TIGRFAMs:TIGR00461
UniParc:UPI000276B4D8SEG:seg::::
Description
Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:K4CLA3]
Coordinates
chr8:+:53084181..53091231
Molecular Weight (calculated)
113073.0 Da
IEP (calculated)
7.141
GRAVY (calculated)
-0.174
Length
1036 amino acids
Sequence
(BLAST)
0001: MERARKLANR AILKRLVSQS KQSRSNEIPS PSSLYRPSRY VSSLSPYTFQ ARNSVKSFNT QQVRSISVEA LKPSDTFPRR HNSATPEEQT KMAEFCGFQS
0101: LDALIDATVP QSIRSESMKL PKFDGGLTES QMIEHMQKLA SKNKVFKSYI GMGYYNTYVP PVILRNLLEN PAWYTQYTPY QAEISQGRLE SLLNYQTMIT
0201: DLTGLPMSNA SLLDEGTAAA EAMAMCNNIL KGKKKTFLIA NNCHPQTIEI CKTRADGFDL KVVTVDLKDI DYKSGDVCGV LVQYPGTEGE ILDYGEFIKN
0301: AHAHGVKVVM ASDLLALTML KPPGELGADI VVGSAQRFGV PMGYGGPHAA FLATSQEYKR MMPGRIIGLS VDSTGKPALR MAMQTREQHI RRDKATSNIC
0401: TAQALLANMA AMYAVYHGPE GLKTIGQRVH GLAGTFSAGL KKLGTVEVQD LPFFDTVKVK CSDAKAIADV ATKNDINVRI VDNNTITVSF DETTTLEDVD
0501: DLFKVFALGK PVPFTAQSIA QEVENLIPSG LTRETPFLTH QIFNSYHTEH ELLRYLHKLQ SKDLSLCHSM IPLGSCTMKL NATTEMMPVT WPSFANIHPF
0601: APTEQAAGYQ EMFDDLGALL CTITGFDSFS LQPNAGAAGE YAGLMVIRAY HMSRGDHHRN VCIIPVSAHG TNPASAAMCG MKIVAVGTDA KGNINIEELR
0701: KAAEAHKDNL SALMVTYPST HGVYEEGIDE ICKIIHDNGG QVYMDGANMN AQVGLTSPGF IGADVCHLNL HKTFCIPHGG GGPGMGPIGV KKHLAPYLPS
0801: HPVVSTGGIP SPDQSKPLGA ISAAPWGSAL ILPISYTYIA MMGSKGLTDA SKIAILSANY MAKRLEKHYP VLFRGVNGTC AHEFIIDLRG FKNTAGIEPE
0901: DVAKRLIDYG FHGPTMSWPV PGTLMIEPTE SESKAELDRF CDALISIREE IAQIEKGNVD INNNVLKGAP HPPSMLMADA WTKPYSREYA AYPAPWLRSA
1001: KFWPTTGRVD NVYGDRNLIC TLLPVSEMAE EKAATA
Best Arabidopsis Sequence Match ( AT4G33010.1 )
(BLAST)
0001: MERARRLAYR GIVKRLVNDT KRHRNAETPH LVPHAPARYV SSLSPFISTP RSVNHTAAFG RHQQTRSISV DAVKPSDTFP RRHNSATPDE QTHMAKFCGF
0101: DHIDSLIDAT VPKSIRLDSM KFSKFDAGLT ESQMIQHMVD LASKNKVFKS FIGMGYYNTH VPTVILRNIM ENPAWYTQYT PYQAEISQGR LESLLNFQTV
0201: ITDLTGLPMS NASLLDEGTA AAEAMAMCNN ILKGKKKTFV IASNCHPQTI DVCKTRADGF DLKVVTSDLK DIDYSSGDVC GVLVQYPGTE GEVLDYAEFV
0301: KNAHANGVKV VMATDLLALT VLKPPGEFGA DIVVGSAQRF GVPMGYGGPH AAFLATSQEY KRMMPGRIIG ISVDSSGKQA LRMAMQTREQ HIRRDKATSN
0401: ICTAQALLAN MAAMYAVYHG PAGLKSIAQR VHGLAGIFSL GLNKLGVAEV QELPFFDTVK IKCSDAHAIA DAASKSEINL RVVDSTTITA SFDETTTLDD
0501: VDKLFKVFAS GKPVPFTAES LAPEVQNSIP SSLTRESPYL THPIFNMYHT EHELLRYIHK LQSKDLSLCH SMIPLGSCTM KLNATTEMMP VTWPSFTDIH
0601: PFAPVEQAQG YQEMFENLGD LLCTITGFDS FSLQPNAGAA GEYAGLMVIR AYHMSRGDHH RNVCIIPVSA HGTNPASAAM CGMKIITVGT DAKGNINIEE
0701: VRKAAEANKD NLAALMVTYP STHGVYEEGI DEICNIIHEN GGQVYMDGAN MNAQVGLTSP GFIGADVCHL NLHKTFCIPH GGGGPGMGPI GVKNHLAPFL
0801: PSHPVIPTGG IPQPEKTAPL GAISAAPWGS ALILPISYTY IAMMGSGGLT DASKIAILNA NYMAKRLEKH YPVLFRGVNG TVAHEFIIDL RGFKNTAGIE
0901: PEDVAKRLMD YGFHGPTMSW PVPGTLMIEP TESESKAELD RFCDALISIR EEIAQIEKGN ADVQNNVLKG APHPPSLLMA DTWKKPYSRE YAAFPAPWLR
1001: SSKFWPTTGR VDNVYGDRKL VCTLLPEEEQ VAAAVSA
Arabidopsis Description
GLDP1Glycine cleavage system P protein [Source:UniProtKB/TrEMBL;Acc:A0A178UTF1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.