CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	mitochondrion
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89303
CDX90583
CDX92796
CDX92970
CDX93575
CDX94877
CDX95075
CDX97366
CDY06308
CDY09752
CDY10329
CDY10330
CDY14299
CDY22690
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	CDX93575	AT1G08290.1	24104567
AT4G15560.1	CDX95075	AT1G08290.1	24104567
AT4G15560.1	CDY06308	AT1G08290.1	24104567
AT4G15560.1	CDY22690	AT1G08290.1	24104567
AT4G15560.1	CDX92970	AT3G22970.1	24104567
AT4G15560.1	CDX94877	AT3G22970.1	24104567
AT4G15560.1	CDY10329	AT3G22970.1	24104567
AT4G15560.1	CDY10330	AT3G22970.1	24104567
AT4G15560.1	CDX90583	AT4G15560.1	21798944
AT4G15560.1	CDY09752	AT4G15560.1	21798944
AT4G15560.1	CDY52177	AT4G15560.1	21798944
AT4G15560.1	CDY64791	AT4G15560.1	21798944
AT4G15560.1	CDX89303	AT4G26780.1	24104567
AT4G15560.1	CDX92796	AT4G26780.1	24104567
AT4G15560.1	CDX97366	AT4G26780.1	24104567
AT4G15560.1	CDY14299	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64791	Canola	plastid	91.41	93.58
Bra033495.1-P	Field mustard	plastid	90.31	93.5
CDX90583	Canola	plastid	83.77	89.77
CDY09752	Canola	plastid	86.49	88.3
AT4G15560.1	Thale cress	plastid	85.27	87.17
GSMUA_Achr10P...	Banana	cytosol	72.31	83.46
CDY48893	Canola	plastid	79.95	81.84
CDY32433	Canola	plastid	77.9	79.75
Solyc01g067890.2.1	Tomato	plastid	78.17	79.69
PGSC0003DMT400058821	Potato	plastid	77.9	79.42
VIT_05s0020g02130.t01	Wine grape	plastid	77.35	79.19
KRH20991	Soybean	plastid	77.63	78.92
KRH02173	Soybean	plastid	76.4	78.65
KRH50940	Soybean	plastid	76.53	76.53
Os05t0408900-03	Rice	plastid	74.9	76.25
TraesCS1D01G255100.1	Wheat	plastid	73.81	75.98
TraesCS1A01G255800.1	Wheat	plastid	73.67	75.84
TraesCS1B01G266500.1	Wheat	plastid	73.53	75.7
EES19518	Sorghum	mitochondrion, plastid	74.08	75.21
GSMUA_Achr3P24940_001	Banana	plastid	76.53	75.0
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	73.4	74.1
Zm00001d038170_P001	Maize	plastid	75.17	73.66
KRH11287	Soybean	peroxisome, plastid	42.16	71.53
KRH16140	Soybean	mitochondrion, plastid	10.91	61.07
CDX69763	Canola	plastid	47.89	50.43

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	GO:A0A078IQI4
UniProt:A0A078IQI4	EnsemblPlants:CDY52177	ProteinID:CDY52177	ProteinID:CDY52177.1	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00005029001	InterPro:IPR009014	HAMAP:MF_00315
PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322
PANTHER:PTHR43322:SF4	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniPathway:UPA00064	UniParc:UPI0004EE0814	SEG:seg	:

Description

BnaC01g22400DBnaC01g22400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQI4]

Coordinates

chrLK033062:-:74961..81165

Molecular Weight (calculated)

79155.1 Da

IEP (calculated)

8.341

GRAVY (calculated)

-0.149

Length

733 amino acids

Sequence
(BLAST)

001: MALSAFAFPS YIIAKGVLTD SCKQTSLSSS RSLATDLPSP CRRPNNSHSN RKVKVNASLV EKGEYYSNRP PTPLLDTINY PIHMKNLSIK ELKQLSDELR
101: SDVIFNVSKT GGHLGSSLGV VELTVALHYI FNTPQDKILW DVGHQSYPHK ILTGRRGKMP TMRQTNGLSG FTKRGESEHD CFGTGHSSTT ISAGLGMAVG
201: RDLKGKSNNV VAVIGDGAMT AGQAYEAMNN AGYLDSDMIV ILNDNKQVSL PTATLDGPSP PVGALSSALS RLQSNPALRE LREVAKASGV TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSTL FEELGLYYIG PVDGHNIDDM VAILKEVKSA RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGK QFKSSNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQASSQHSGL GPSIDPGYHQ
501: KEVVHDVDLQ KLPVRFAMDR AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEAELFHM VATASAIDDR PSCFRYPRGN GIGVALPPGN KGIPLEVGKG
601: RILKEGERVA LLGYGSAVQS CLGAAVMLQE RGLNITVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KIINKIIHSL
701: LPHDYSLSIL YQLHLRSLFL NHLNHNKRYT HHH

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.