CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90583
CDY09752
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	CDX90583	AT4G15560.1	24104567
AT4G26780.1	CDY09752	AT4G15560.1	24104567
AT4G26780.1	CDY52177	AT4G15560.1	24104567
AT4G26780.1	CDY64791	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97366	Canola	mitochondrion	92.07	93.68
Bra010427.1-P	Field mustard	mitochondrion	93.1	86.26
CDX92796	Canola	mitochondrion	80.34	72.59
CDX89303	Canola	mitochondrion	81.03	72.31
AT4G26780.1	Thale cress	mitochondrion	81.03	71.87
CDY19906	Canola	mitochondrion	60.69	60.27
CDY17310	Canola	mitochondrion	60.34	59.93
KRG98682	Soybean	mitochondrion	55.86	55.86
KRH46251	Soybean	mitochondrion	54.48	54.67
PGSC0003DMT400057433	Potato	mitochondrion	55.17	54.24
GSMUA_Achr5P27100_001	Banana	mitochondrion	55.17	53.51
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	54.83	53.18
EER96498	Sorghum	mitochondrion	55.52	52.79
HORVU5Hr1G053680.2	Barley	mitochondrion	53.79	51.83
TraesCS5A01G176600.3	Wheat	mitochondrion	53.45	51.49
TraesCS5D01G180300.1	Wheat	mitochondrion	53.1	51.16
TraesCS5B01G173300.1	Wheat	mitochondrion	53.1	51.16
Os09t0284400-01	Rice	mitochondrion	53.1	50.99
Zm00001d005513_P001	Maize	mitochondrion	53.1	50.83
VIT_19s0090g01190.t01	Wine grape	mitochondrion	55.86	50.0
Os08t0338700-01	Rice	mitochondrion	51.72	48.23
PGSC0003DMT400033475	Potato	mitochondrion	55.17	47.62
KRH73804	Soybean	mitochondrion	55.52	46.67
Solyc12g014470.1.1	Tomato	mitochondrion	53.1	45.97
Zm00001d050123_P001	Maize	mitochondrion	51.38	44.88
KXG25038	Sorghum	plastid	51.38	41.5

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	GO:A0A078FN30	UniProt:A0A078FN30	EnsemblPlants:CDY14299
ProteinID:CDY14299	ProteinID:CDY14299.1	ncoils:Coil	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0030234
GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	EnsemblPlantsGene:GSBRNA2T00078897001	InterPro:GrpE	InterPro:GrpE_coiled_coil
InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773
ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0004EF2F4E
SEG:seg	:	:	:	:	:

Description

BnaA08g14300DGrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A078FN30]

Coordinates

chrLK032041:+:743542..745031

Molecular Weight (calculated)

32122.6 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.658

Length

290 amino acids

Sequence
(BLAST)

001: MLASRILSRV SRSAGLRSSL SAAALPARNQ APIFSNRYHS LVHNFSQKLV AAHVPLDSFS LQRFSLSSTS TTPESHEKES SNTEASKTAE ANDGDDEEEM
101: SKDDLVKLVA EKEELLSVKE EEIKQMKDKV LRTYAEMENV MDRTRRDAEN TKKYALQNFA KSLLDVADNL GRASSVVKES FSKLDETSKD SAAGAAPLLK
201: TLLEGVEMTE KQLAEVFKKF GMEKYDPINE PFDPNRHNAM FQVPDASKPE GTVAHVLKSG YTLYDRVIRP AEVGVTQGGE SEENKKESDA

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.