Factsheet for Solyc12g014470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067890.2.1
Solyc02g082060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	Solyc01g067890.2.1	AT4G15560.1	24104567
AT5G55200.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033475	Potato	mitochondrion	84.78	84.52
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	60.9	68.23
CDY17310	Canola	mitochondrion	46.57	53.42
VIT_19s0090g01190.t01	Wine grape	mitochondrion	51.64	53.4
Bra002925.1-P	Field mustard	mitochondrion	46.57	53.24
CDY14299	Canola	mitochondrion	45.97	53.1
GSMUA_Achr5P27100_001	Banana	mitochondrion	47.16	52.84
CDX92796	Canola	mitochondrion	50.15	52.34
CDX97366	Canola	mitochondrion	44.48	52.28
CDY19906	Canola	mitochondrion	45.37	52.05
AT4G26780.1	Thale cress	mitochondrion	50.75	51.99
AT5G55200.1	Thale cress	mitochondrion	46.27	51.32
KRH46251	Soybean	mitochondrion	43.58	50.52
Bra010427.1-P	Field mustard	mitochondrion	47.16	50.48
KRG98682	Soybean	mitochondrion	43.58	50.34
Zm00001d005513_P001	Maize	mitochondrion	44.78	49.51
CDX89303	Canola	mitochondrion	47.76	49.23
EER96498	Sorghum	mitochondrion	44.18	48.52
HORVU5Hr1G053680.2	Barley	mitochondrion	43.28	48.17
TraesCS5A01G176600.3	Wheat	mitochondrion	43.28	48.17
TraesCS5B01G173300.1	Wheat	mitochondrion	43.28	48.17
TraesCS5D01G180300.1	Wheat	mitochondrion	42.99	47.84
Os09t0284400-01	Rice	mitochondrion	42.69	47.35
Bra026403.1-P	Field mustard	mitochondrion	39.7	47.33
Os08t0338700-01	Rice	mitochondrion	42.69	45.98
KRH73804	Soybean	mitochondrion	47.16	45.8
Zm00001d050123_P001	Maize	mitochondrion	43.28	43.67
KXG25038	Sorghum	plastid	45.37	42.34

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	ncoils:Coil	GO:GO:0000166	GO:GO:0000774
GO:GO:0001405	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0030234
GO:GO:0042803	GO:GO:0050790	GO:GO:0051082	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil
InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	UniProt:K4DCY2	HAMAP:MF_01151	PFAM:PF01025
PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014
EnsemblPlantsGene:Solyc12g014470.1	EnsemblPlants:Solyc12g014470.1.1	UniParc:UPI000276A7DD	SEG:seg	:	:

Description

GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:K4DCY2]

Coordinates

chr12:+:5447836..5450290

Molecular Weight (calculated)

37728.3 Da

IEP (calculated)

5.874

GRAVY (calculated)

-0.749

Length

335 amino acids

Sequence
(BLAST)

001: MLVGRISSRF PKSIVAQCRS SLLLYSREQQ QQQYVPIFAS EFHSFREFKE KVTLFRESLL QQFRISSSAS PQHNEKEASQ SQSKPGSTKE NGEVSEKCEA
101: SVSADSQGQD ENDESGPDLA SNDNTNENVK RRRRRTKQVV SSDSDSDLDT EDLSRDDLVK LVAEKEELLK IKDDEFQKMK EKALRSYAEM ENLMNRTKRE
201: AENSKKFAIQ NFVKALLDVA DNMGRASSVV KESFSKIDES KDTVGAVPLL NTLLEGVEMT DKQLAEVFKK FGVGKYDPTN EEFDPNKHNA VFQVPDPKRN
301: PGMVAVCLKS GYTLHDRIIR PAEVGVTVAM VKQVG

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.