Factsheet for HORVU5Hr1G053680.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060610.9
HORVU7Hr1G002080.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	HORVU1Hr1G060610.9	AT4G15560.1	24104567
AT5G55200.1	HORVU7Hr1G002080.2	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G176600.3	Wheat	mitochondrion	95.35	95.35
TraesCS5D01G180300.1	Wheat	mitochondrion	94.68	94.68
TraesCS5B01G173300.1	Wheat	mitochondrion	94.68	94.68
GSMUA_AchrUn_...	Banana	cytosol	38.87	72.22
Os09t0284400-01	Rice	mitochondrion	71.76	71.52
Zm00001d005513_P001	Maize	mitochondrion	70.1	69.64
EER96498	Sorghum	mitochondrion	67.77	66.89
CDY14299	Canola	mitochondrion	51.83	53.79
CDX97366	Canola	mitochondrion	49.17	51.93
KRH46251	Soybean	mitochondrion	48.51	50.52
VIT_19s0090g01190.t01	Wine grape	mitochondrion	54.15	50.31
KRG98682	Soybean	mitochondrion	48.17	50.0
CDX92796	Canola	mitochondrion	52.82	49.53
Bra010427.1-P	Field mustard	mitochondrion	51.49	49.52
CDY17310	Canola	mitochondrion	47.84	49.32
CDY19906	Canola	mitochondrion	47.51	48.97
PGSC0003DMT400057433	Potato	mitochondrion	47.84	48.81
Bra002925.1-P	Field mustard	mitochondrion	47.51	48.81
AT4G26780.1	Thale cress	mitochondrion	52.82	48.62
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	47.84	48.16
CDX89303	Canola	mitochondrion	51.16	47.38
Bra026403.1-P	Field mustard	mitochondrion	43.19	46.26
AT5G55200.1	Thale cress	mitochondrion	45.18	45.03
PGSC0003DMT400033475	Potato	mitochondrion	50.17	44.94
Solyc12g014470.1.1	Tomato	mitochondrion	48.17	43.28
KRH73804	Soybean	mitochondrion	48.51	42.32

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	UniProt:A0A287R8Y9	ncoils:Coil	GO:GO:0000166
GO:GO:0000774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	InterPro:GrpE
InterPro:GrpE_coiled_coil	InterPro:GrpE_head	EnsemblPlantsGene:HORVU5Hr1G053680	EnsemblPlants:HORVU5Hr1G053680.2	InterPro:IPR009012	InterPro:IPR013805
HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28
SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI000B481E94	SEG:seg	:	:

Description

GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A287R8Y9]

Coordinates

chrchr5H:+:421464690..421468867

Molecular Weight (calculated)

32922.6 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.536

Length

301 amino acids

Sequence
(BLAST)

001: MVAARFLARA TRQCAAAVVA ASARRPLGGV AVAAARPFVS SFGPARVPYM LNQPLRYSSN IFQRFGFSSS TPQQNDKEVH EAKDQESTAH ESNGEASKED
101: SGSSGSTEDL DLSKEDLVKL VFEKDELLTL KDEEVKDMKD KVLRSYAEME NVIARTKRES ENSKKYAVQN FSKSLLDVAD NLARASSVVK ESFSKLDTSE
201: DSSGAVPLLK TLLEGVDMTD KQLGEVFKKF GVEKFDPMNE KFDPDKHFAL FQIPDPSKPS GTVASVVKVG YMLHDRVLRP AEVGVTEGGP SEEPEDKSSG
301: D

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.