Factsheet for HORVU1Hr1G060610.9

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060610.9
HORVU3Hr1G051040.1
HORVU4Hr1G073730.1
HORVU5Hr1G053680.2
HORVU5Hr1G105950.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	HORVU3Hr1G051040.1	AT2G26080.1	24104567
AT4G15560.1	HORVU4Hr1G073730.1	AT3G22970.1	24104567
AT4G15560.1	HORVU5Hr1G105950.2	AT3G22970.1	24104567
AT4G15560.1	HORVU1Hr1G060610.9	AT4G15560.1	21798944
AT4G15560.1	HORVU5Hr1G053680.2	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G255100.1	Wheat	plastid	91.6	93.4
TraesCS1A01G255800.1	Wheat	plastid	91.46	93.26
TraesCS1B01G266500.1	Wheat	plastid	91.32	93.12
Os05t0408900-03	Rice	plastid	86.5	87.22
GSMUA_Achr10P...	Banana	cytosol	76.17	87.09
EES19518	Sorghum	mitochondrion, plastid	85.12	85.6
Bra001832.1-P	Field mustard	peroxisome	71.07	83.5
KRH02173	Soybean	plastid	81.27	82.87
Zm00001d038170_P001	Maize	plastid	85.26	82.75
VIT_05s0020g02130.t01	Wine grape	plastid	79.48	80.59
Solyc01g067890.2.1	Tomato	plastid	79.75	80.53
PGSC0003DMT400058821	Potato	plastid	79.48	80.25
KRH20991	Soybean	plastid	79.48	80.03
KRH50940	Soybean	plastid	80.17	79.4
AT4G15560.1	Thale cress	plastid	78.24	79.22
CDX90583	Canola	plastid	74.38	78.95
Bra012779.1-P	Field mustard	plastid	74.1	78.66
CDY09752	Canola	plastid	77.55	78.41
Bra033495.1-P	Field mustard	plastid	76.45	78.39
CDY64791	Canola	plastid	77.27	78.35
GSMUA_Achr3P24940_001	Banana	plastid	80.58	78.21
KRH11287	Soybean	peroxisome, plastid	45.87	77.08
CDY48893	Canola	plastid	75.9	76.96
CDY32433	Canola	plastid	75.76	76.82
AT3G21500.3	Thale cress	plastid	69.42	74.45
CDY52177	Canola	plastid	74.1	73.4
HORVU1Hr1G084900.9	Barley	plastid	66.94	68.26
HORVU2Hr1G126150.4	Barley	plastid	66.8	63.82
KRH16140	Soybean	mitochondrion, plastid	10.06	55.73

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	UniProt:A0A287FUS7
InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:HORVU1Hr1G060610
EnsemblPlants:HORVU1Hr1G060610.9	InterPro:IPR009014	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292
ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI000B476221	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr1H:+:440058824..440062491

Molecular Weight (calculated)

78459.4 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.071

Length

726 amino acids

Sequence
(BLAST)

001: LPPSSSRPGL SRLVAIQRTP PLLFARHGRF FFFFLSVRAI RLSSWPMLDR FGEQTPRKRS SSISASLSER EAEYHSQRPP TPLLDTVNYP IHMKNLSLKE
101: LQQLSDELRS DVIFHVSKTG GHLGSSLGVV ELTVALHYVF NTPQDKLLWD VGHQSYPHKI LTGRRDKMPT MRQTNGLSGF IKRSESEYDS FGTGHSSTTI
201: SAALGMAVGR DLKGAKNNVV AVIGDGAMTA GQAYEAMNNA GYLDSDMIVI LNDNKQVSLP TATLDGPAPP VGALSGALSK LQSSRPLREL REVAKGVTKQ
301: IGGSVHEIAA KVDEYARGMI SGSGSSLFEE LGLYYIGPVD GHNIDDLITI LREVKGTKTT GPVLIHVITE KGRGYPYAER ASDKYHGVAK FDPATGKQFK
401: VPAKTLSYTN YFAEALIAEA EQDSKIVAIH AAMGGGTGLN YFLRRFPNRC FDVGIAEQHA VTFAAGLACE GLKPFCAIYS SFLQRGYDQV VHDVDLQKLP
501: VRFAMDRAGL VGADGPTHCG AFDVTFMACL PNMVVMAPSD EAELLNMVAT AAAIDDRPSC FRYPRGNGIG VPLPENYKGT AIEVGKGRIM IEGERVALLG
601: YGSAVQYCMA ASSIVAQHGL RVTVADARFC KPLDHALIRS LAKTHEVIIT VEEGSIGGFG SHVAQFMALD GLLDGKLKWR PVVLPDKYID HGSPADQLAE
701: AGLTPSHIAA TVFNILGQAR EALAIM

Best Arabidopsis Sequence Match ( AT3G21500.1 )
(BLAST)

001: MSYQTQINKF SQMALSVFAF PSYINRNPSL KYLKPSSMSS TKYSKVRATT FSEKGEYYSN RPPTPLLDTI NHPMHMKNLS IKELKVLSDE LRSDVIFNVS
101: KTGGHLGSNL GVVELTVALH YIFNTPHDKI LWDVGHQSYP HKILTGRRGK MKTIRQTNGL SGYTKRRESE HDSFGTGHSS TTLSAGLGMA VGRDLKGMNN
201: SVVSVIGDGA MTAGQAYEAM NNAGYLHSNM IVILNDNKQV SLPTANLDGP TQPVGALSCA LSRLQSNCGM IRETSSTLFE ELGFHYVGPV DGHNIDDLVS
301: ILETLKSTKT IGPVLIHVVT EKGRGYPYAE RADDKYHVLK FDPETGKQFK NISKTQSYTS CFVEALIAEA EADKDIVAIH AAMGGGTMLN LFESRFPTRC
401: FDVGIAEQHA VTFAAGLACE GLKPFCTIYS SFMQRAYDQV VHDVDLQKLP VRFAIDRAGL MGADGPTHCG AFDVTFMACL PNMIVMAPSD EAELFNMVAT
501: AAAIDDRPSC FRYHRGNGIG VSLPPGNKGV PLQIGRGRIL RDGERVALLG YGSAVQRCLE AASMLSERGL KITVADARFC KPLDVALIRS LAKSHEVLIT
601: VEEGSIGGFG SHVVQFLALD GLLDGKLKVY RTWITNGSTS

Arabidopsis Description

DXPS11-deoxy-D-xylulose 5-phosphate synthase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTC7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.