CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48893	Canola	plastid	93.58	93.58
GSMUA_Achr10P...	Banana	cytosol	74.86	84.41
AT3G21500.3	Thale cress	plastid	79.47	84.05
CDY64791	Canola	plastid	83.66	83.66
CDY09752	Canola	plastid	83.52	83.29
CDX90583	Canola	plastid	79.19	82.89
Solyc01g067890.2.1	Tomato	plastid	80.17	79.83
PGSC0003DMT400058821	Potato	plastid	79.89	79.55
KRH02173	Soybean	plastid	78.77	79.21
KRH20991	Soybean	plastid	79.61	79.06
VIT_05s0020g02130.t01	Wine grape	plastid	79.05	79.05
TraesCS1A01G255800.1	Wheat	plastid	77.65	78.09
TraesCS1D01G255100.1	Wheat	plastid	77.65	78.09
TraesCS1B01G266500.1	Wheat	plastid	77.51	77.95
Os05t0408900-03	Rice	plastid	78.35	77.92
CDY52177	Canola	plastid	79.75	77.9
KRH50940	Soybean	plastid	79.33	77.49
KRH11287	Soybean	peroxisome, plastid	46.37	76.85
EES19518	Sorghum	mitochondrion, plastid	77.23	76.59
GSMUA_Achr3P24940_001	Banana	plastid	79.89	76.47
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	76.82	75.76
Zm00001d038170_P001	Maize	plastid	78.63	75.27
KRH16140	Soybean	mitochondrion, plastid	11.17	61.07
CDX69763	Canola	plastid	51.96	53.45

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	GO:A0A078H6J6
UniProt:A0A078H6J6	EnsemblPlants:CDY32433	ProteinID:CDY32433	ProteinID:CDY32433.1	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00052040001	InterPro:IPR009014	HAMAP:MF_00315
PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322
PANTHER:PTHR43322:SF4	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniPathway:UPA00064	UniParc:UPI0004EF2164	SEG:seg	:

Description

BnaC03g42170DBnaC03g42170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6J6]

Coordinates

chrLK032294:-:391276..394644

Molecular Weight (calculated)

77671.3 Da

IEP (calculated)

8.509

GRAVY (calculated)

-0.156

Length

716 amino acids

Sequence
(BLAST)

001: MALSVFRFPS YLSRETSTDH CNTTSLSSSR SLATYFPSIC RRSTVFPSKI RTTVNGSLVK KGDYYSTRPP TPLLDTINHP IHMKNLSIKE LKALSDELRS
101: DVVFNVSKTG GHLGSNLGVV ELTVALHYIF NTPQDKILWD VGHQSYPHKI LTGRRGKMKT LRQTNGLSGF TKRGESEHDS FGTGHSSTTI SAGLGMAVGR
201: DLKGRDNNVV AVIGDGAMTA GQAYEAMNNA GYLDSDMIVI LNDNKQVSLP TANLDGPTPP VGALSRALSK LQSKRPLREL REAAKGMTKK IGGSMHRLAS
301: KVDEYARGMI SGAGSTLFEE LGFYYIGPVD GHNIDDLVSI LKEVKSTRTS GPVLIHVVTE KGHGYHYAER AHDKYHGVVK FDPETGKQFK NISETKSYTT
401: YFAEALIAEA EAHKDVVAIH AAMGGGTGLN LFQRRFPTRC FDVGIAEQHA VTFAAGLACE GLKPFCAIYS SFMQRAYDQV VHDVDLQKLP VRFAMDRAGL
501: VGADGPTHCG AFDVTFMACL PNMIVMAPSD EAELFNMVAT AAAIDDHPSC FRYPRGNGVG VSLPPGNKGV PLEVGKGRIL REGERVALLG YGSAVQNCLE
601: ASSILDKRGL KMTVADARFC KPLDIALIRN LAKSHEVLIT VEEGSIGGFG SHVVQFLALD GLLDGKLKWR PMVLPDRYIE HGSPLDQLAE AGLTASHIAA
701: TVLNLIGTPR ETLYWK

Best Arabidopsis Sequence Match ( AT3G21500.3 )
(BLAST)

001: MSYQTQINKF SQMALSVFAF PSYINRNPSL KYLKPSSMSS TKYSKVRATT FSEKGEYYSN RPPTPLLDTI NHPMHMKNLS IKELKVLSDE LRSDVIFNVS
101: KTGGHLGSNL GVVELTVALH YIFNTPHDKI LWDVGHQSYP HKILTGRRGK MKTIRQTNGL SGYTKRRESE HDSFGTGHSS TTLSAGLGMA VGRDLKGMNN
201: SVVSVIGDGA MTAGQAYEAM NNAGYLHSNM IVILNDNKQV SLPTANLDGP TQPVGALSCA LSRLQSNCGM IRETSSTLFE ELGFHYVGPV DGHNIDDLVS
301: ILETLKSTKT IGPVLIHVVT EKGRGYPYAE RADDKYHGVL KFDPETGKQF KNISKTQSYT SCFVEALIAE AEADKDIVAI HAAMGGGTML NLFESRFPTR
401: CFDVGIAEQH AVTFAAGLAC EGLKPFCTIY SSFMQRAYDQ VVHDVDLQKL PVRFAIDRAG LMGADGPTHC GAFDVTFMAC LPNMIVMAPS DEAELFNMVA
501: TAAAIDDRPS CFRYHRGNGI GVSLPPGNKG VPLQIGRGRI LRDGERVALL GYGSAVQRCL EAASMLSERG LKITVADARF CKPLDVALIR SLAKSHEVLI
601: TVEEGSIGGF GSHVVQFLAL DGLLDGKLKW RPMVLPDRYI EHGSPMDQLA EAGLTASHIA ATALNLMGTP REALFWE

Arabidopsis Description

DXPS11-deoxy-D-xylulose 5-phosphate synthase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTC7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.