CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89303
CDX90583
CDX92796
CDX92970
CDX93575
CDX94877
CDX95075
CDX97366
CDY06308
CDY09752
CDY10329
CDY10330
CDY14299
CDY22690
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	CDX93575	AT1G08290.1	24104567
AT4G15560.1	CDX95075	AT1G08290.1	24104567
AT4G15560.1	CDY06308	AT1G08290.1	24104567
AT4G15560.1	CDY22690	AT1G08290.1	24104567
AT4G15560.1	CDX92970	AT3G22970.1	24104567
AT4G15560.1	CDX94877	AT3G22970.1	24104567
AT4G15560.1	CDY10329	AT3G22970.1	24104567
AT4G15560.1	CDY10330	AT3G22970.1	24104567
AT4G15560.1	CDX90583	AT4G15560.1	21798944
AT4G15560.1	CDY09752	AT4G15560.1	21798944
AT4G15560.1	CDY52177	AT4G15560.1	21798944
AT4G15560.1	CDY64791	AT4G15560.1	21798944
AT4G15560.1	CDX89303	AT4G26780.1	24104567
AT4G15560.1	CDX92796	AT4G26780.1	24104567
AT4G15560.1	CDX97366	AT4G26780.1	24104567
AT4G15560.1	CDY14299	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012779.1-P	Field mustard	plastid	98.68	98.68
CDY09752	Canola	plastid	96.93	92.34
CDY64791	Canola	plastid	95.32	91.06
AT4G15560.1	Thale cress	plastid	92.69	88.42
CDY52177	Canola	plastid	89.77	83.77
GSMUA_Achr10P...	Banana	cytosol	76.17	82.05
CDY48893	Canola	plastid	84.06	80.31
CDY32433	Canola	plastid	82.89	79.19
Solyc01g067890.2.1	Tomato	plastid	82.31	78.3
VIT_05s0020g02130.t01	Wine grape	plastid	81.58	77.93
PGSC0003DMT400058821	Potato	plastid	81.87	77.89
KRH02173	Soybean	plastid	80.85	77.67
KRH20991	Soybean	plastid	81.73	77.53
TraesCS1A01G255800.1	Wheat	plastid	78.95	75.84
Os05t0408900-03	Rice	plastid	79.82	75.83
TraesCS1D01G255100.1	Wheat	plastid	78.8	75.7
KRH50940	Soybean	plastid	80.99	75.58
TraesCS1B01G266500.1	Wheat	plastid	78.51	75.42
EES19518	Sorghum	mitochondrion, plastid	78.8	74.65
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	78.95	74.38
Zm00001d038170_P001	Maize	plastid	80.26	73.4
GSMUA_Achr3P24940_001	Banana	plastid	79.82	72.99
KRH11287	Soybean	peroxisome, plastid	44.74	70.83
KRH16140	Soybean	mitochondrion, plastid	11.26	58.78
CDX69763	Canola	plastid	51.46	50.57

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	GO:A0A078DTT8
EnsemblPlants:CDX90583	ProteinID:CDX90583	ProteinID:CDX90583.1	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987
GO:GO:0016114	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00151218001	InterPro:IPR009014	HAMAP:MF_00315	PFAM:PF02779
PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4
MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N
UniPathway:UPA00064	UniParc:UPI0004EDC362	SEG:seg	:	:	:

Description

BnaA03g41980D

Coordinates

chrLK031863:-:951200..954489

Molecular Weight (calculated)

73197.8 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.144

Length

684 amino acids

Sequence
(BLAST)

001: MALSAFAFPS YITTKGGLTD SCCKSNSLSS SRSLSADLPS PCLRPNTSHS NRKAKVNASL AEKGEYYSNR PPTPLLDTIN YPIHMKNLST KELKQLSDEL
101: RSDVIFNVSK TGGHLGSSLG VVELTVALHY IFNTPQDKIL WDVGHQSYPH KILTGRRGKM PTMRQTNGLS GFTKRGESEH DCFGTGHSST TISAGLGMAV
201: GRDLKGKNNN VVAVIGDGAM TAGQAYEAMN NAGYLDSDMI VILNDNKQVS LPTATLDGPS PPVGALSSAL SRLQSNPALR ELREGVTKQI GGPMHQLAAK
301: VDEYARGMIS GTGSTLFEEL GLYYIGPVDG HNIDDLVAIL KEVKSARTTG PVLIHVITEK GRGYPYAERA DDKYHGVVKF DPATGKQFKT TNKTQSYTTY
401: FAEALVAEAE VDKDVVAIHA AMGGGTGLNL FQRRFPTRCF DVGIAEQHAV VHDVDLQKLP VRFAMDRAGL VGADGPTHCG AFDVTFMACL PNMIVMAPSD
501: EAELYNIVAT AAAIDDRPSC FRYPRGNGIG VALPPGNKGV PVEVGKGRIL KEGERVALLG YGSAVQSCLG AAVMLQERGL NVTVADARFC KPLDRALIRS
601: LAKSHEVLIT VEEGSIGGFG SHVVQFLALD GLLDGKLKWR PMVLPDRYID HGSPADQMAE AGLMPSHIAA TALNLIGAPR EALY

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.