Factsheet for Bra012779.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001897.1-P
Bra010427.1-P
Bra012779.1-P
Bra018638.1-P
Bra026403.1-P
Bra031621.1-P
Bra033495.1-P
Bra033896.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	Bra018638.1-P	AT1G08290.1	24104567
AT4G15560.1	Bra031621.1-P	AT1G08290.1	24104567
AT4G15560.1	Bra001897.1-P	AT3G22970.1	24104567
AT4G15560.1	Bra033896.1-P	AT3G22970.1	24104567
AT4G15560.1	Bra012779.1-P	AT4G15560.1	21798944
AT4G15560.1	Bra033495.1-P	AT4G15560.1	21798944
AT4G15560.1	Bra010427.1-P	AT4G26780.1	24104567
AT4G15560.1	Bra026403.1-P	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90583	Canola	plastid	98.68	98.68
Bra033495.1-P	Field mustard	plastid	94.59	91.38
AT4G15560.1	Thale cress	plastid	92.69	88.42
Bra001832.1-P	Field mustard	peroxisome	76.61	84.79
GSMUA_Achr10P...	Banana	cytosol	76.02	81.89
Solyc01g067890.2.1	Tomato	plastid	82.16	78.16
VIT_05s0020g02130.t01	Wine grape	plastid	81.43	77.79
PGSC0003DMT400058821	Potato	plastid	81.73	77.75
KRH20991	Soybean	plastid	81.73	77.53
KRH02173	Soybean	plastid	80.7	77.53
TraesCS1A01G255800.1	Wheat	plastid	78.66	75.56
Os05t0408900-03	Rice	plastid	79.53	75.56
TraesCS1D01G255100.1	Wheat	plastid	78.51	75.42
KRH50940	Soybean	plastid	80.7	75.31
TraesCS1B01G266500.1	Wheat	plastid	78.22	75.14
EES19518	Sorghum	mitochondrion, plastid	78.66	74.52
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	78.66	74.1
Zm00001d038170_P001	Maize	plastid	79.97	73.13
GSMUA_Achr3P24940_001	Banana	plastid	79.68	72.86
KRH11287	Soybean	peroxisome, plastid	44.59	70.6
KRH16140	Soybean	mitochondrion, plastid	11.11	58.02
Bra008967.1-P	Field mustard	plastid	51.32	50.43

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	EnsemblPlantsGene:Bra012779
EnsemblPlants:Bra012779.1	EnsemblPlants:Bra012779.1-P	InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
GO:GO:0016740	InterPro:IPR009014	UniProt:M4D8G9	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780
PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI00025407DD	SEG:seg	:	:

Description

AT4G15560 (E=8e-232) CLA1, DEF, CLA, DXS, DXPS2 | CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase

Coordinates

chrA03:+:22311843..22314709

Molecular Weight (calculated)

73201.8 Da

IEP (calculated)

7.466

GRAVY (calculated)

-0.142

Length

684 amino acids

Sequence
(BLAST)

001: MALSAFAFPS YITTKGGLTD SCCKSNSLSS SRSLSADLPS PCLRPNTSHS NRKAKVNASL AEKGEYYSNR PPTPLLDTIN YPIHMKNLST KELKQLSDEL
101: RSDVIFNVSK TGGHLGSSLG VVELTVALHY IFNTPQDKIL WDVGHQSYPH KILTGRRGKM PTMRQTNGLS GFTKRGESEH DCFGTGHSST TISAGLGMAV
201: GRDLKGKNNN VVAVIGDGAM TAGQAYEAMN NAGYLDSDMI VILNDNKQVS LPTATLDGPS PPVGALSSAL SRLQSNPALR ELREGVTKQI GGPMHQLAAK
301: VDEYARGMIS GTGSTLFEEL GLYYIGPVDG HNIDDLVAIL KEVKSARTTG PVLIHVITEK GRGYPYAERA DDKYHGVVKF DPATGKQFKT TNKTQSYTTY
401: FAEALVAEAE VDKDVVAIHA AMGGGTGLNL FQRRFPTRCF DVGIAEQHAV VHDVDLQKLP VRFAMDRAGL VGADGPTHCG AFDVTFMGCF PNMIVMAPSD
501: EAELFNIVAT AAAIDDRPSC FRYPRGNGIG VALPPGNKGV PVEVGKGRIL KEGERVALLG YGSAVQSCLG AAVMLQERGL NVTVADARFC KPLDRALIRS
601: LAKSHEVLIT VEEGSIGGFG SHVVQFLALD GLLDGKLKWR PMVLPDRYID HGSPADQMAE AGLMPSHIAA TALNLIGAPR EALY

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.