Factsheet for Solyc01g067890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067890.2.1
Solyc06g053910.2.1
Solyc06g074360.2.1
Solyc07g064930.2.1
Solyc08g065220.2.1
Solyc09g082980.2.1
Solyc12g014470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	Solyc06g074360.2.1	AT1G08290.1	24104567
AT4G15560.1	Solyc08g065220.2.1	AT2G26080.1	24104567
AT4G15560.1	Solyc06g053910.2.1	AT3G22970.1	24104567
AT4G15560.1	Solyc09g082980.2.1	AT3G22970.1	24104567
AT4G15560.1	Solyc01g067890.2.1	AT4G15560.1	21798944
AT4G15560.1	Solyc07g064930.2.1	AT4G26780.1	24104567
AT4G15560.1	Solyc12g014470.1.1	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058821	Potato	plastid	99.17	99.17
GSMUA_Achr10P...	Banana	cytosol	79.28	89.76
VIT_05s0020g02130.t01	Wine grape	plastid	85.95	86.31
Bra001832.1-P	Field mustard	peroxisome	74.13	86.25
KRH02173	Soybean	plastid	84.98	85.81
KRH20991	Soybean	plastid	85.95	85.71
KRH50940	Soybean	plastid	85.4	83.77
CDY64791	Canola	plastid	82.89	83.24
Bra033495.1-P	Field mustard	plastid	81.78	83.05
Os05t0408900-03	Rice	plastid	82.75	82.64
AT4G15560.1	Thale cress	plastid	82.34	82.57
EES19518	Sorghum	mitochondrion, plastid	82.75	82.41
CDX90583	Canola	plastid	78.3	82.31
KRH11287	Soybean	peroxisome, plastid	49.37	82.18
CDY09752	Canola	plastid	82.06	82.17
Bra012779.1-P	Field mustard	plastid	78.16	82.16
TraesCS1D01G255100.1	Wheat	plastid	81.22	82.02
TraesCS1B01G266500.1	Wheat	plastid	81.08	81.88
TraesCS1A01G255800.1	Wheat	plastid	81.08	81.88
CDY48893	Canola	plastid	79.97	80.31
GSMUA_Achr3P24940_001	Banana	plastid	83.45	80.21
CDY32433	Canola	plastid	79.83	80.17
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	80.53	79.75
Zm00001d038170_P001	Maize	plastid	82.75	79.55
CDY52177	Canola	plastid	79.69	78.17
AT3G21500.3	Thale cress	plastid	73.3	77.84
Solyc11g010850.1.1	Tomato	plastid	68.57	69.05
KRH16140	Soybean	mitochondrion, plastid	11.13	61.07
Solyc08g066950.2.1	Tomato	plastid	53.55	54.3

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2	EMBL:AF143812
InterPro:Dxylulose-5-P_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008661	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014
HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801	ScanProsite:PS00802
PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	UniProt:Q9XH50	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
EnsemblPlantsGene:Solyc01g067890.2	EnsemblPlants:Solyc01g067890.2.1	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI00000A098C	:	:

Description

1-D-deoxyxylulose 5-phosphate synthase [Source:UniProtKB/TrEMBL;Acc:Q9XH50]

Coordinates

chr1:-:76868469..76872760

Molecular Weight (calculated)

77610.2 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.063

Length

719 amino acids

Sequence
(BLAST)

001: MALCAYAFPG ILNRTGVVSD SSKATPLFSG WIHGTDLQFL FQHKLTHEVK KRSRVVQASL SESGEYYTQR PPTPILDTVN YPIHMKNLSL KELKQLADEL
101: RSDTIFNVSK TGGHLGSSLG VVELTVALHY VFNAPQDRIL WDVGHQSYPH KILTGRRDKM STLRQTDGLA GFTKRSESEY DCFGTGHSST TISAGLGMAV
201: GRDLKGRNNN VIAVIGDGAM TAGQAYEAMN NAGYLDSDMI VILNDNRQVS LPTATLDGPV APVGALSSAL SRLQSNRPLR ELREVAKGVT KQIGGPMHEL
301: AAKVDEYARG MISGSGSTLF EELGLYYIGP VDGHNIDDLI AILKEVRSTK TTGPVLIHVV TEKGRGYPYA ERAADKYHGV AKFDPATGKQ FKASAKTQSY
401: TTYFAEALIA EAEADKDIVA IHAAMGGGTG MNLFHRRFPT RCFDVGIAEQ HAVTFAAGLA CEGIKPFCAI YSSFMQRAYD QVVHDVDLQK LPVRFAMDRA
501: GLVGADGPTH CGAFDVTYMA CLPNMVVMAP SDEAELFHMV ATAAAIDDRP SCFRYPRGNG IGVELPAGNK GIPLEVGKGR ILIEGERVAL LGYGSAVQNC
601: LDAAIVLESR GLQVTVADAR FCKPLDHALI RSLAKSHEVL ITVEEGSIGG FGSHVVQFMA LDGLLDGKLK WRPIVLPDRY IDHGSPVDQL AEAGLTPSHI
701: AATVFNILGQ TREALEVMT

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.