Factsheet for Solyc07g064930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067890.2.1
Solyc02g082060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	Solyc01g067890.2.1	AT4G15560.1	24104567
AT5G55200.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057433	Potato	mitochondrion	87.96	89.15
Solyc12g014470.1.1	Tomato	mitochondrion	68.23	60.9
CDY17310	Canola	mitochondrion	54.52	55.82
Bra002925.1-P	Field mustard	mitochondrion	54.18	55.29
CDY14299	Canola	mitochondrion	53.18	54.83
CDX97366	Canola	mitochondrion	51.51	54.04
CDY19906	Canola	mitochondrion	52.17	53.42
KRG98682	Soybean	mitochondrion	51.51	53.1
VIT_19s0090g01190.t01	Wine grape	mitochondrion	57.53	53.09
KRH46251	Soybean	mitochondrion	51.17	52.94
Bra010427.1-P	Field mustard	mitochondrion	54.85	52.4
CDX92796	Canola	mitochondrion	55.85	52.02
GSMUA_Achr5P27100_001	Banana	mitochondrion	51.84	51.84
CDX89303	Canola	mitochondrion	55.85	51.38
AT4G26780.1	Thale cress	mitochondrion	55.85	51.07
AT5G55200.1	Thale cress	mitochondrion	51.51	50.99
Bra026403.1-P	Field mustard	mitochondrion	45.82	48.75
Os09t0284400-01	Rice	mitochondrion	49.16	48.68
HORVU5Hr1G053680.2	Barley	mitochondrion	48.16	47.84
TraesCS5A01G176600.3	Wheat	mitochondrion	47.83	47.51
TraesCS5B01G173300.1	Wheat	mitochondrion	47.83	47.51
Zm00001d005513_P001	Maize	mitochondrion	47.83	47.19
TraesCS5D01G180300.1	Wheat	mitochondrion	47.49	47.18
EER96498	Sorghum	mitochondrion	47.83	46.89
Os08t0338700-01	Rice	mitochondrion	48.16	46.3
Zm00001d050123_P001	Maize	mitochondrion	51.17	46.08
KRH73804	Soybean	mitochondrion	52.17	45.22
KXG25038	Sorghum	plastid	51.51	42.9

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	ncoils:Coil	GO:GO:0000166	GO:GO:0000774
GO:GO:0001405	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0030234
GO:GO:0042803	GO:GO:0050790	GO:GO:0051082	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil
InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	UniProt:K4CHH2	HAMAP:MF_01151	PFAM:PF01025
PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014
EnsemblPlantsGene:Solyc07g064930.2	EnsemblPlants:Solyc07g064930.2.1	UniParc:UPI000276C83B	SEG:seg	:	:

Description

GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:K4CHH2]

Coordinates

chr7:+:66893170..66898004

Molecular Weight (calculated)

33405.5 Da

IEP (calculated)

5.745

GRAVY (calculated)

-0.594

Length

299 amino acids

Sequence
(BLAST)

001: MVLSRISSRF SRNVLTQCRN SLLLYYRQNQ QHHVPILSSQ FHSIRNIREK VSLVPESALQ RFGISSSASP QPDEKETSQS QGGGGSGAEK ASASADSNVQ
101: DEKKESDSDS DLDLEDLSRE DLVKYLIEKE ELLKMKHEEF QKMQDKVLRT YAEMENVMER TRREAENTKK FAIQNFVKAL LDVSDNLGRA SSVVKESFSK
201: IDVSKDTTGA VPLLKTLLEG VEMTDKQLAE VFKKFGVEKI DPTNEEFDPN KHNAVFQVPD PEKAPGMIAV CLKPGYSLHG RIIRPAEVGV TVAVESTGN

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.