Factsheet for Solyc02g082060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060130.2.1
Solyc01g100350.2.1
Solyc01g107290.2.1
Solyc02g070760.2.1
Solyc02g070770.2.1
Solyc02g082060.1.1
Solyc03g093510.2.1
Solyc03g112900.2.1
Solyc03g121460.1.1
Solyc04g079000.2.1
Solyc05g007200.2.1
Solyc05g021100.2.1
Solyc05g052020.2.1
Solyc06g009750.2.1
Solyc07g007450.2.1
Solyc08g006590.1.1
Solyc08g068880.1.1
Solyc08g076530.2.1
Solyc08g078220.2.1
Solyc09g013110.2.1
Solyc10g047370.1.1
Solyc10g076360.1.1
Solyc11g042620.1.1
Solyc12g005240.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25660.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT4G25660.1	Solyc01g107290.2.1	AT1G49850.1	21798944
AT4G25660.1	Solyc03g121460.1.1	AT1G55190.1	21798944
AT4G25660.1	Solyc11g042620.1.1	AT1G71480.1	21798944
AT4G25660.1	Solyc05g021100.2.1	AT2G30880.1	21798944
AT4G25660.1	Solyc02g070760.2.1	AT2G34460.1	21798944
AT4G25660.1	Solyc02g070770.2.1	AT2G34460.1	21798944
AT4G25660.1	Solyc10g076360.1.1	AT2G38360.1	21798944
AT4G25660.1	Solyc03g121460.1.1	AT3G13710.1	21798944
AT4G25660.1	Solyc12g005240.1.1	AT3G20680.1	21798944
AT4G25660.1	Solyc09g013110.2.1	AT3G54120.1	21798944
AT4G25660.1	Solyc01g060130.2.1	AT4G02080.1	21798944
AT4G25660.1	Solyc01g100350.2.1	AT4G02080.1	21798944
AT4G25660.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT4G25660.1	Solyc08g076530.2.1	AT4G17720.1	21798944
AT4G25660.1	Solyc03g112900.2.1	AT4G22220.1	21798944
AT4G25660.1	Solyc07g007450.2.1	AT4G22220.1	21798944
AT4G25660.1	Solyc02g082060.1.1	AT4G25660.1	21798944
AT4G25660.1	Solyc10g047370.1.1	AT5G09450.1	21798944
AT4G25660.1	Solyc08g006590.1.1	AT5G24990.1	21798944
AT4G25660.1	Solyc08g068880.1.1	AT5G24990.1	21798944
AT4G25660.1	Solyc08g078220.2.1	AT5G47310.1	21798944
AT4G25660.1	Solyc03g093510.2.1	AT5G51180.1	21798944
AT4G25660.1	Solyc05g052020.2.1	AT5G51180.1	21798944
AT4G25680.1	Solyc01g060130.2.1	AT1G56330.1	21798944
AT4G25680.1	Solyc01g100350.2.1	AT1G56330.1	21798944
AT4G25680.1	Solyc05g021100.2.1	AT2G30880.1	21798944
AT4G25680.1	Solyc10g076360.1.1	AT2G38360.1	21798944
AT4G25680.1	Solyc03g121460.1.1	AT3G13710.1	21798944
AT4G25680.1	Solyc03g121460.1.1	AT3G13720.1	21798944
AT4G25680.1	Solyc02g082060.1.1	AT4G25660.1	21798944
AT4G25680.1	Solyc02g082060.1.1	AT4G25680.1	21798944
AT4G25680.1	Solyc04g079000.2.1	AT4G33350.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018924	Potato	cytosol	89.67	90.09
Solyc03g034310.1.1	Tomato	cytosol	18.78	46.51
Solyc03g008010.2.1	Tomato	cytosol	45.07	40.51
HORVU1Hr1G049510.1	Barley	cytosol	25.35	40.3
Zm00001d029725_P001	Maize	extracellular, mitochondrion	46.01	40.0
TraesCS1B01G205700.1	Wheat	cytosol, peroxisome, plastid	45.07	39.67
HORVU1Hr1G049520.3	Barley	cytosol, peroxisome, plastid	45.07	39.51
Os10t0533900-01	Rice	cytosol, nucleus, peroxisome	45.54	39.43
EER94588	Sorghum	cytosol	45.07	39.18
Bra013908.1-P	Field mustard	cytosol	44.13	38.37
CDX89404	Canola	cytosol	44.13	38.37
CDX94429	Canola	cytosol	44.13	38.37
CDX89402	Canola	cytosol	45.07	38.25
AT4G25680.1	Thale cress	cytosol	45.07	38.1
CDX94426	Canola	cytosol	45.07	38.1
AT4G25660.1	Thale cress	cytosol	45.54	38.04
Bra013910.1-P	Field mustard	cytosol	44.6	37.85
HORVU7Hr1G002080.2	Barley	cytosol	34.74	37.56
CDY66007	Canola	cytosol	43.66	36.61
Bra010452.1-P	Field mustard	cytosol	43.66	36.61
GSMUA_Achr11P...	Banana	cytosol	34.74	36.27
CDY49480	Canola	cytosol	42.25	35.57
TraesCS1A01G184300.1	Wheat	cytosol	45.07	34.29
TraesCS1D01G192400.1	Wheat	cytosol, peroxisome, plastid	45.07	34.16
EER87703	Sorghum	cytosol	42.72	33.96
Zm00001d045580_P001	Maize	cytosol	42.25	33.58
Os06t0107000-01	Rice	cytosol, nucleus	41.31	32.59
TraesCS7A01G019000.1	Wheat	cytosol	44.13	31.97
TraesCSU01G065800.1	Wheat	cytosol	43.66	31.42
TraesCS7D01G016100.1	Wheat	nucleus	44.13	28.92
Solyc03g117100.2.1	Tomato	cytosol	23.0	21.78
Solyc12g006880.1.1	Tomato	cytosol	22.54	21.43
Solyc08g078220.2.1	Tomato	cytosol	20.19	19.46
Solyc04g080030.2.1	Tomato	mitochondrion	22.07	19.34
Solyc06g068380.2.1	Tomato	cytosol	23.0	18.56
Solyc12g089060.1.1	Tomato	mitochondrion	21.13	18.22
Solyc01g109430.2.1	Tomato	cytosol, mitochondrion, nucleus	18.78	16.06

Protein Annotations

EnsemblPlants:Solyc02g082060.1.1	EnsemblPlantsGene:Solyc02g082060.1	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF9
PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI0002767D18	UniProt:K4BA76	MapMan:19.4.1.7

Description

No Description!

Coordinates

chr2:-:45796490..45797131

Molecular Weight (calculated)

23891.5 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.262

Length

213 amino acids

Sequence
(BLAST)

001: MAEVILHVYD LTKSDGQDAV NFGVVQMNRL LKDTISFGGM FHTAVQVYDN VEWAYGSCVI GSGVFSCPAT KNPNYTYREK IVLGRTECSA HKVNQILKDL
101: RDAWPGSKYN MVSRNSKHFC DEFLEKLGVP KLPNWANRFA NIGDLAKDAA GIAVQAKEKA SKLVFHPVDF ALNMTTTSKN SKAIYNPSHE FRFRFNFAVN
201: NFKVAAPVIR SDR

Best Arabidopsis Sequence Match ( AT4G25680.1 )
(BLAST)

001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ

Arabidopsis Description

At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.