Factsheet for Solyc02g070770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g121460.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT2G34460.1	Solyc03g121460.1.1	AT1G55190.1	21798944
AT2G34460.1	Solyc03g121460.1.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021415	Potato	plastid	96.23	96.23
VIT_10s0003g03090.t01	Wine grape	cytosol	70.21	82.0
Solyc02g070760.2.1	Tomato	plastid	74.66	74.15
KRH42344	Soybean	plastid	69.52	70.0
KRH58466	Soybean	plastid	68.84	68.84
AT2G34460.1	Thale cress	plastid	62.67	65.36
CDY43675	Canola	plastid	62.67	65.12
Bra021912.1-P	Field mustard	plastid	62.33	62.98
TraesCS7D01G346000.1	Wheat	plastid	59.59	61.05
EES15131	Sorghum	plastid	58.9	60.78
Zm00001d031799_P001	Maize	plastid	58.56	60.42
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	58.56	60.0
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	58.56	60.0
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	58.22	59.65
Os06t0360300-01	Rice	plastid	58.56	58.76
GSMUA_Achr4P31210_001	Banana	plastid	28.42	47.16
Solyc09g010930.2.1	Tomato	extracellular	23.29	26.67
Solyc01g008920.2.1	Tomato	plastid	25.34	22.7
Solyc10g051110.1.1	Tomato	plastid	31.16	12.4

Protein Annotations

EnsemblPlants:Solyc02g070770.2.1	EnsemblPlantsGene:Solyc02g070770.2	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR15020	PANTHER:PTHR15020:SF11	PFAM:PF13460	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002768868	UniProt:K4B858	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2:-:40382627..40386479

Molecular Weight (calculated)

31744.3 Da

IEP (calculated)

8.653

GRAVY (calculated)

-0.004

Length

292 amino acids

Sequence
(BLAST)

001: MATATGLFFL KTSAFSITSK RPSVSLFVNK VHSFRLRAAN IEESEIEGEE EVGISEKKKI FVAGATGNTG KRIVEQLLAK GFAVKAGVLD VDKAKSTLPG
101: QNPDLQIVKA DVTEGSVRLA DAIGNDSDAV ICATGFRRSL DFLAPWKVDN FGTVNLVEAC RTLGVKRFLL VSSILVNGAA MGQLFNPAYV FLNVLGLTLI
201: AKLQAEQYIR RSGINYTIIR PGGLKNDPPQ GNIVMEQEDT LYEGSISRDQ VAEVAVEALL HPESHYKVVE IVARTDAPKR SFKELFGSIK QQ

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.