Factsheet for Zm00001d031799_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002122_P007
Zm00001d026425_P003
Zm00001d037747_P001
Zm00001d039455_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT2G34460.1	Zm00001d026425_P003	AT1G14340.1	21798944
AT2G34460.1	Zm00001d037747_P001	AT1G55190.1	21798944
AT2G34460.1	Zm00001d039455_P002	AT1G55190.1	21798944
AT2G34460.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT2G34460.1	Zm00001d039455_P002	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15131	Sorghum	plastid	97.53	97.53
TraesCS7D01G346000.1	Wheat	plastid	81.63	81.05
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	81.63	81.05
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	80.21	79.65
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	80.21	79.65
Os06t0360300-01	Rice	plastid	78.8	76.63
VIT_10s0003g03090.t01	Wine grape	cytosol	60.07	68.0
AT2G34460.1	Thale cress	plastid	62.54	63.21
KRH42344	Soybean	plastid	61.84	60.34
CDY43675	Canola	plastid	59.72	60.14
KRH58466	Soybean	plastid	60.78	58.9
Solyc02g070770.2.1	Tomato	plastid	60.42	58.56
Bra021912.1-P	Field mustard	plastid	59.72	58.48
PGSC0003DMT400021415	Potato	plastid	59.01	57.19
Solyc02g070760.2.1	Tomato	plastid	56.54	54.42
GSMUA_Achr4P31210_001	Banana	plastid	27.56	44.32
Zm00001d038694_P001	Maize	cytosol	11.31	29.63
Zm00001d007921_P001	Maize	plastid	31.1	27.94
Zm00001d046769_P001	Maize	cytosol	18.73	27.75
Zm00001d040326_P001	Maize	plastid	22.26	27.63
Zm00001d034665_P001	Maize	plastid	24.73	27.24
Zm00001d029200_P001	Maize	plastid	30.04	25.22
Zm00001d035672_P001	Maize	peroxisome	10.95	25.2
Zm00001d047463_P001	Maize	plastid	28.98	24.4
Zm00001d011069_P001	Maize	plastid	23.67	22.48
Zm00001d037076_P001	Maize	cytosol	8.13	18.7
Zm00001d032783_P001	Maize	plastid	20.85	16.81

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A1D6KLA9	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0010287	GO:GO:0016020	GO:GO:0016853
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM03676.1	PFAM:PF13460	PANTHER:PTHR15020	PANTHER:PTHR15020:SF11
SUPFAM:SSF51735	UniParc:UPI000221C9C2	EnsemblPlantsGene:Zm00001d031799	EnsemblPlants:Zm00001d031799_P001	EnsemblPlants:Zm00001d031799_T001	:

Description

3-beta hydroxysteroid dehydrogenase/isomerase

Coordinates

chr1:-:202175993..202181535

Molecular Weight (calculated)

29920.1 Da

IEP (calculated)

8.974

GRAVY (calculated)

0.108

Length

283 amino acids

Sequence
(BLAST)

001: MASAVCGVTA RAHLPSAVPA AARKLFFRCR AASTMNEASA SSPDAEEKKT TTVFVAGSTG RTGKLVVEKL LAKGFGVVAG TTDVSRARGS LPQDPNLQLV
101: RADVTEGVDK LVEAVRGVDA VVCATGFRRS FDPFAPWKVD NFGTVNLVEA CRKAGVARFV LVSSILVNGA AMGQLLNPAY IVLNLLGLTL VAKLQAENHI
201: RKSGIDYTIV RPGGLTDQPP TGNIVMEPED TLYSGSISRS QVAEVAVEAL VCPESSYKVV EIIARTDAPN RSLKDMYAAI KQN

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.