Factsheet for VIT_10s0003g03090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01
VIT_09s0002g02400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT2G34460.1	VIT_09s0002g02400.t01	AT1G55190.1	21798944
AT2G34460.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42344	Soybean	plastid	83.6	72.07
KRH58466	Soybean	plastid	83.6	71.58
Solyc02g070770.2.1	Tomato	plastid	82.0	70.21
PGSC0003DMT400021415	Potato	plastid	80.0	68.49
Solyc02g070760.2.1	Tomato	plastid	80.0	68.03
AT2G34460.1	Thale cress	plastid	74.0	66.07
CDY43675	Canola	plastid	74.0	65.84
Bra021912.1-P	Field mustard	plastid	74.4	64.36
TraesCS7D01G346000.1	Wheat	plastid	69.2	60.7
EES15131	Sorghum	plastid	68.0	60.07
Zm00001d031799_P001	Maize	plastid	68.0	60.07
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	68.0	59.65
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	68.0	59.65
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	67.6	59.3
Os06t0360300-01	Rice	plastid	66.8	57.39
GSMUA_Achr4P31210_001	Banana	plastid	29.6	42.05
VIT_06s0009g03780.t01	Wine grape	plastid	30.0	22.32
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	26.8	20.36
VIT_03s0063g02020.t01	Wine grape	plastid	35.6	16.82

Protein Annotations

EntrezGene:100248605	wikigene:100248605	Gene3D:3.40.50.720	MapMan:35.1	EMBL:AM459157	ProteinID:CAN70158
ProteinID:CAN70158.1	ProteinID:CCB55780	ProteinID:CCB55780.1	UniProt:F6HMJ1	EMBL:FN595992	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	EntrezGene:LOC100248605	wikigene:LOC100248605	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF13460	PANTHER:PTHR15020	PANTHER:PTHR15020:SF11	SUPFAM:SSF51735	TIGR:TC60195	TMHMM:TMhelix
UniParc:UPI00015CCF22	ArrayExpress:VIT_10s0003g03090	EnsemblPlantsGene:VIT_10s0003g03090	EnsemblPlants:VIT_10s0003g03090.t01	unigene:Vvi.10468	RefSeq:XP_002276135
RefSeq:XP_002276135.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:5236062..5238768

Molecular Weight (calculated)

26987.6 Da

IEP (calculated)

6.550

GRAVY (calculated)

0.029

Length

250 amino acids

Sequence
(BLAST)

001: MEGSEITEEV EVTVKKTIFV AGATGNTGKR IVEQLLAKGF AVKAGVRDLD KAKTTFPGGN PSLQIVKADV TEGSVKLAEA IGDDSDAVIC ATGFQRSWDL
101: LAPWKVDNFG TVNLVEACRK LGVNRFILIS SILVNGAAMG QILNPAYIFL NAFGLILIAK LQAEQYIRKS GINYTIIRPG GLRNDPPTGN IVMEPEDTLS
201: EGTISRDHVA EVAVEALVHP EASYKVVEIV SRTDAPKRSF KDLFASIKQR

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.