CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX96860
CDY08228
CDY24050
CDY26125
CDY33064
CDY37482
CDY49093
CDY51733
CDY51734
CDY55133
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	CDX84035	AT1G14340.1	21798944
AT2G34460.1	CDX96860	AT1G14340.1	21798944
AT2G34460.1	CDY49093	AT1G14340.1	21798944
AT2G34460.1	CDY62016	AT1G14340.1	21798944
AT2G34460.1	CDY08228	AT1G55190.1	21798944
AT2G34460.1	CDY24050	AT1G55190.1	21798944
AT2G34460.1	CDY26125	AT1G55190.1	21798944
AT2G34460.1	CDY33064	AT1G55190.1	21798944
AT2G34460.1	CDY37482	AT3G13720.1	21798944
AT2G34460.1	CDY51733	AT3G13720.1	21798944
AT2G34460.1	CDY51734	AT3G13720.1	21798944
AT2G34460.1	CDY55133	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021912.1-P	Field mustard	plastid	98.22	95.5
AT2G34460.1	Thale cress	plastid	82.21	82.5
VIT_10s0003g03090.t01	Wine grape	cytosol	65.84	74.0
KRH42344	Soybean	plastid	69.04	66.9
KRH58466	Soybean	plastid	69.39	66.78
Solyc02g070770.2.1	Tomato	plastid	65.12	62.67
PGSC0003DMT400021415	Potato	plastid	64.77	62.33
TraesCS7D01G346000.1	Wheat	plastid	62.63	61.75
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	62.63	61.75
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	62.28	61.4
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	62.28	61.4
Solyc02g070760.2.1	Tomato	plastid	64.06	61.22
EES15131	Sorghum	plastid	60.85	60.42
Os06t0360300-01	Rice	plastid	61.92	59.79
Zm00001d031799_P001	Maize	plastid	60.14	59.72
GSMUA_Achr4P31210_001	Banana	plastid	27.76	44.32
CDY40342	Canola	endoplasmic reticulum, peroxisome, plastid	23.49	26.09
CDY10458	Canola	peroxisome, plastid	23.49	26.09
CDY68555	Canola	plastid	28.83	24.47
CDY13439	Canola	plastid	28.83	24.4
CDY65254	Canola	plastid	26.33	22.84
CDX93359	Canola	plastid	25.98	22.19
CDX91377	Canola	cytosol	21.71	21.79
CDX74941	Canola	plastid	16.73	16.32
CDX99298	Canola	plastid	34.88	15.29
CDX92286	Canola	plastid	34.88	15.26

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A078HYP2	EnsemblPlants:CDY43675	ProteinID:CDY43675	ProteinID:CDY43675.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0010287	GO:GO:0016020
EnsemblPlantsGene:GSBRNA2T00077025001	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR15020	PANTHER:PTHR15020:SF11
SUPFAM:SSF51735	UniParc:UPI0004EDFD49	SEG:seg	:	:	:

Description

BnaA04g20160DBnaA04g20160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYP2]

Coordinates

chrLK032564:-:196998..198176

Molecular Weight (calculated)

30193.1 Da

IEP (calculated)

9.547

GRAVY (calculated)

-0.028

Length

281 amino acids

Sequence
(BLAST)

001: MTTSLLLLRH SSSAAVFFSS SSFVFAKNTN SSRSFASIKM EQNTAKKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV DKAKTSFRQD PSLHFVKADV
101: TEGSEKLAEA IGDDSHAVIC ATGFRPGFDL FAPWKIDNFG TVSLVDACKK QGVNRFVLVS SILVNGAAMG QILNPAYIFL NVFGLTLVAK LQAEKYIKRS
201: GVNYTIVRPG GLKNDPPSGN VVMEPEDTLS GGSISRDQVA EVAVEALLDE EESSYKVVEI VASADAPKRS YKDLFASVKG H

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.