CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022369.1-P	Field mustard	plastid	97.04	96.89
CDX99298	Canola	plastid	92.83	92.98
AT3G18890.1	Thale cress	plastid	78.66	78.78
Zm00001d007921_P001	Maize	plastid	28.04	57.14
VIT_03s0063g02020.t01	Wine grape	plastid	46.73	56.71
KRH24515	Soybean	plastid	44.86	54.55
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	41.28	52.48
KRH29518	Soybean	vacuole	44.08	50.81
Os10t0100300-01	Rice	nucleus, plastid	38.63	49.9
EER97808	Sorghum	plastid	29.75	48.35
TraesCS5D01G277900.1	Wheat	plastid	41.74	47.77
TraesCS5B01G270200.1	Wheat	plastid	42.21	47.71
KRH24514	Soybean	plastid	31.15	47.62
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	46.42	43.63
KRH29515	Soybean	plastid	12.62	41.75
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	41.9	41.58
Solyc10g051110.1.1	Tomato	plastid	46.57	40.74
HORVU5Hr1G074000.3	Barley	mitochondrion	41.43	38.83
CDY43675	Canola	plastid	15.26	34.88
CDY10458	Canola	peroxisome, plastid	10.28	26.09
CDY40342	Canola	endoplasmic reticulum, peroxisome, plastid	9.81	24.9
CDY68555	Canola	plastid	11.99	23.26
CDY13439	Canola	plastid	11.99	23.19
CDY65254	Canola	plastid	10.12	20.06
CDX93359	Canola	plastid	10.28	20.06
CDX91377	Canola	cytosol	8.57	19.64
CDX74941	Canola	plastid	7.63	17.01

Protein Annotations

EnsemblPlants:CDX92286	EnsemblPlantsGene:GSBRNA2T00154010001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR14194
PANTHER:PTHR14194:SF83	PFAM:PF13460	ProteinID:CDX92286	ProteinID:CDX92286.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0004EDBCBF	MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	:	:	:

Description

BnaA05g21210D

Coordinates

chrLK031871:+:1263806..1267366

Molecular Weight (calculated)

68530.1 Da

IEP (calculated)

4.747

GRAVY (calculated)

-0.398

Length

642 amino acids

Sequence
(BLAST)

001: MEGTSFLRGQ PLTTVPSLPR KRFLLQGWKS NQIVRFSGLK NQSDSRKSRS FFDLSLRASD KGPIKASSAV TDASPTNSEF KEQDLVFVAG ATGKVGSRTV
101: RELLKLGFRV RAGVRSAQRA KGLVQSVKDM NTDEGTQPVE KLEVVECDLE KKDSIQPALG NASVVICCIG ASEKEISDIT GPYRIDYLAT KNLVDAATSA
201: KVNNFILVTS LGTNKFGFPA AILNLFWGVL CWKRKAEEAL IASGLNYAIV RPGGMERPTD AYKETHNLTL ALDDTLFGGQ VSNLQVAELL ACMAKNPQLS
301: CSKIVEVVAE TTAPLTPIEK LLEKIPSKRP YVPPPKESVA AKEVPPVPAE PVKQESVAAK EVTPIPTEPV TQEPTAPKED EAPAEVKEVK PRPLSPYAAY
401: EDLKPPTSPI PATALGATKA KEVDATPVPE VEATQAPVDA NVAPPPENPV EANVPVVEEV KQVEEKKERP LSPYASYENL KPPSSPTPKA SGIQKSDPVA
501: PAPTDSDTGE SSTVATIFTE EAEAPPAIPK MRPLSPYAAY ADLEPPTSPT PASTGPKKTA PAEEISEVPG GNDVLQTVDG SVNTTESASV PEAETVNSVT
601: DTSLTPEESA ADQPKPRPLS PYTMYEDMKP PTSPLPSPVI NH

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.