Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g051110.1.1 | Tomato | plastid | 92.83 | 86.38 |
| VIT_03s0063g02020.t01 | Wine grape | plastid | 45.1 | 58.22 |
| KRH24515 | Soybean | plastid | 44.51 | 57.58 |
| Zm00001d007921_P001 | Maize | plastid | 25.77 | 55.87 |
| GSMUA_Achr8P04880_001 | Banana | endoplasmic reticulum, vacuole | 39.82 | 53.86 |
| KRH29518 | Soybean | vacuole | 43.48 | 53.32 |
| KRH24514 | Soybean | plastid | 31.63 | 51.43 |
| Os10t0100300-01 | Rice | nucleus, plastid | 36.46 | 50.1 |
| EER97808 | Sorghum | plastid | 28.4 | 49.11 |
| KRH29515 | Soybean | plastid | 13.47 | 47.42 |
| CDX99298 | Canola | plastid | 44.22 | 47.11 |
| CDX92286 | Canola | plastid | 43.63 | 46.42 |
| AT3G18890.1 | Thale cress | plastid | 43.48 | 46.33 |
| Bra022369.1-P | Field mustard | plastid | 43.34 | 46.03 |
| TraesCS5D01G277900.1 | Wheat | plastid | 37.34 | 45.45 |
| TraesCS5B01G270200.1 | Wheat | plastid | 37.48 | 45.07 |
| TraesCS5A01G269800.1 | Wheat | cytosol, extracellular, plastid | 37.19 | 39.26 |
| HORVU5Hr1G074000.3 | Barley | mitochondrion | 37.04 | 36.93 |
| PGSC0003DMT400021415 | Potato | plastid | 13.91 | 32.53 |
| PGSC0003DMT400022763 | Potato | extracellular | 10.83 | 24.83 |
| PGSC0003DMT400058473 | Potato | cytosol | 9.22 | 24.32 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021326 | EnsemblPlantsGene:PGSC0003DMG400008269 | EntrezGene:102605419 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| PANTHER:PTHR14194 | PANTHER:PTHR14194:SF83 | PFAM:PF13460 | PGSC:PGSC0003DMG400008269 | RefSeq:XP_015165147.1 | SEG:seg |
| SUPFAM:SSF51735 | UniParc:UPI000295A4AB | UniProt:M1AEY1 | MapMan:1.1.5.2.2.2 | MapMan:23.1.3.5.3 | : |
Description
Tic62 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008269]
Coordinates
chr10:-:43730215..43737028
Molecular Weight (calculated)
72697.7 Da
IEP (calculated)
5.540
GRAVY (calculated)
-0.429
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MELRCLQSLN IPPTGLAEKP FLCGQPITLI HTSTKRGPNS KNLKPLRFRA QISAKISSLE PQGTAKDVKS KDGNLVFVAG ATGRVGSRTV RELLKLGFKV
101: RAGVRSAQRA QPLVKSVEQI KIENTTDGGA KAIEKLEIVE CDLEKSDQIR PALGDASIVI CCIGASEKEI FDVTGPYRID YLATKNLIDA ATVAKVDHFI
201: LLTSLGTNKV GFPAAILNLF WGVLLWKRKA EEALLASGLP YTIVRPGGME RPTDSFKETH NITISEEDTL FGGLVSNLQV AELMAVMAKN RSLSYCKVVE
301: VVAETTAPLT PMEDLLAKIP CQRVEVSPPK ETGDLQKSAT PSSTTSEIPD ASLEKKPAET KLKAAAPLSP FTAYADLKPP TSPSPIPPGG RQEGTIGAED
401: SKPTKEASSV VDYAFDKAEL LTTRPSSPYA AYEDLKPPTS PSPNPPGGHQ EGASGAEDSE PTKAASSVVD STFDKAELLT TRPLSPYIAY EDLKPPTSPS
501: PNPSGGRQEG ASRAEDSEPT KPASSVVDST FDKAELLTTR SLSPYTGYED LKPPTSPSTN PPGGRQEGAS GAENSKPTTE ASSVYLFTFD KAELLTTRPL
601: SPYTAYEDLK PPTSPSPRPS GLKSSATVEV TSPVTGGNDV AINSATNSAK EDSSKNSAFC HSPYPAYEDF KPPSSPTPSF NKM
101: RAGVRSAQRA QPLVKSVEQI KIENTTDGGA KAIEKLEIVE CDLEKSDQIR PALGDASIVI CCIGASEKEI FDVTGPYRID YLATKNLIDA ATVAKVDHFI
201: LLTSLGTNKV GFPAAILNLF WGVLLWKRKA EEALLASGLP YTIVRPGGME RPTDSFKETH NITISEEDTL FGGLVSNLQV AELMAVMAKN RSLSYCKVVE
301: VVAETTAPLT PMEDLLAKIP CQRVEVSPPK ETGDLQKSAT PSSTTSEIPD ASLEKKPAET KLKAAAPLSP FTAYADLKPP TSPSPIPPGG RQEGTIGAED
401: SKPTKEASSV VDYAFDKAEL LTTRPSSPYA AYEDLKPPTS PSPNPPGGHQ EGASGAEDSE PTKAASSVVD STFDKAELLT TRPLSPYIAY EDLKPPTSPS
501: PNPSGGRQEG ASRAEDSEPT KPASSVVDST FDKAELLTTR SLSPYTGYED LKPPTSPSTN PPGGRQEGAS GAENSKPTTE ASSVYLFTFD KAELLTTRPL
601: SPYTAYEDLK PPTSPSPRPS GLKSSATVEV TSPVTGGNDV AINSATNSAK EDSSKNSAFC HSPYPAYEDF KPPSSPTPSF NKM
001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
Arabidopsis Description
TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.