Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99298 | Canola | plastid | 78.94 | 78.94 |
| CDX92286 | Canola | plastid | 78.78 | 78.66 |
| Bra022369.1-P | Field mustard | plastid | 78.63 | 78.38 |
| Zm00001d007921_P001 | Maize | plastid | 28.55 | 58.1 |
| VIT_03s0063g02020.t01 | Wine grape | plastid | 47.27 | 57.28 |
| KRH24515 | Soybean | plastid | 45.09 | 54.73 |
| GSMUA_Achr8P04880_001 | Banana | endoplasmic reticulum, vacuole | 42.43 | 53.86 |
| KRH29518 | Soybean | vacuole | 44.15 | 50.81 |
| Os10t0100300-01 | Rice | nucleus, plastid | 38.85 | 50.1 |
| EER97808 | Sorghum | plastid | 29.95 | 48.61 |
| KRH24514 | Soybean | plastid | 31.05 | 47.38 |
| TraesCS5B01G270200.1 | Wheat | plastid | 40.72 | 45.95 |
| TraesCS5D01G277900.1 | Wheat | plastid | 39.94 | 45.63 |
| KRH29515 | Soybean | plastid | 13.57 | 44.85 |
| PGSC0003DMT400021326 | Potato | cytosol, peroxisome, plastid | 46.33 | 43.48 |
| Solyc10g051110.1.1 | Tomato | plastid | 47.27 | 41.28 |
| TraesCS5A01G269800.1 | Wheat | cytosol, extracellular, plastid | 40.56 | 40.19 |
| HORVU5Hr1G074000.3 | Barley | mitochondrion | 39.78 | 37.23 |
| AT2G34460.1 | Thale cress | plastid | 14.51 | 33.21 |
| AT5G02240.1 | Thale cress | endoplasmic reticulum, peroxisome, plastid | 10.3 | 26.09 |
| AT4G31530.2 | Thale cress | plastid | 11.54 | 21.89 |
| AT2G37660.1 | Thale cress | plastid | 10.61 | 20.92 |
Protein Annotations
| MapMan:1.1.5.2.2.2 | MapMan:23.1.3.5.3 | Gene3D:3.40.50.720 | EntrezGene:821422 | ProteinID:AEE76164.1 | ArrayExpress:AT3G18890 |
| EnsemblPlantsGene:AT3G18890 | RefSeq:AT3G18890 | TAIR:AT3G18890 | RefSeq:AT3G18890-TAIR-G | EnsemblPlants:AT3G18890.1 | TAIR:AT3G18890.1 |
| Unigene:At.27605 | ProteinID:BAB03098.1 | EMBL:BT002039 | EMBL:BT008403 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009528 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009706 |
| GO:GO:0009941 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0098807 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| RefSeq:NP_188519.2 | PFAM:PF13460 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR14194 | PANTHER:PTHR14194:SF83 | UniProt:Q8H0U5 | SUPFAM:SSF51735 | UniParc:UPI00000ADB53 |
| SEG:seg | : | : | : | : | : |
Description
TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
Coordinates
chr3:+:6510982..6515108
Molecular Weight (calculated)
68345.1 Da
IEP (calculated)
8.308
GRAVY (calculated)
-0.370
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.