Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- extracellular 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G277900.1 | Wheat | plastid | 83.62 | 96.43 |
| TraesCS5B01G270200.1 | Wheat | plastid | 81.3 | 92.61 |
| HORVU5Hr1G074000.3 | Barley | mitochondrion | 85.63 | 80.88 |
| Zm00001d007921_P001 | Maize | plastid | 30.6 | 62.86 |
| Os10t0100300-01 | Rice | nucleus, plastid | 47.3 | 61.57 |
| EER97808 | Sorghum | plastid | 33.54 | 54.94 |
| GSMUA_Achr8P04880_001 | Banana | endoplasmic reticulum, vacuole | 38.18 | 48.91 |
| VIT_03s0063g02020.t01 | Wine grape | plastid | 38.79 | 47.45 |
| KRH24515 | Soybean | plastid | 37.87 | 46.4 |
| KRH29518 | Soybean | vacuole | 37.25 | 43.27 |
| CDX99298 | Canola | plastid | 41.73 | 42.12 |
| KRH24514 | Soybean | plastid | 27.2 | 41.9 |
| CDX92286 | Canola | plastid | 41.58 | 41.9 |
| Bra022369.1-P | Field mustard | plastid | 41.27 | 41.52 |
| AT3G18890.1 | Thale cress | plastid | 40.19 | 40.56 |
| PGSC0003DMT400021326 | Potato | cytosol, peroxisome, plastid | 39.26 | 37.19 |
| KRH29515 | Soybean | plastid | 10.82 | 36.08 |
| TraesCS7A01G338800.1 | Wheat | mitochondrion, plastid | 15.77 | 35.79 |
| Solyc10g051110.1.1 | Tomato | plastid | 38.95 | 34.33 |
| TraesCS5A01G481400.1 | Wheat | mitochondrion, plastid | 10.05 | 25.59 |
| TraesCS1A01G030100.1 | Wheat | plastid | 11.59 | 25.08 |
| TraesCS4A01G189000.1 | Wheat | plastid | 11.44 | 22.63 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G269800.1 | EnsemblPlantsGene:TraesCS5A01G269800 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR14194 |
| PANTHER:PTHR14194:SF83 | PFAM:PF13460 | PRINTS:PR01217 | SEG:seg | SUPFAM:SSF51735 | TIGR:cd05243 |
| MapMan:1.1.5.2.2.2 | MapMan:23.1.3.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:480334855..480337272
Molecular Weight (calculated)
65632.7 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.211
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPYATSVLF TPCMDTGRGD EERAPRYPSP EHAAAPRRTP HIAPRRDTRP RAAAAGAGDQ GNPSDVRGVT GAVESYSGSI DMEAKAAAVS LSAPLPRCRV
101: AGGNGPLACS ASARRSRRCG YHHGAPLISL ARPSSSARSF PAGRVYAMAA AATAPVKEQD LVFVAGATGK VGSRTVRELI KLGFRVRAAV RSKERASPLV
201: QSVERLELGE GSAPASRLEL VECDLEKQGE AGIKAAIGDA ALVVCSIGAS EKEILDVTGP YRIDYVATAN LVRAAAKAGV EHFVLVTSLG TTRFGFPAAL
301: LNLFWGVLCW KKMAEEALVA SGVPYTIVRP GGMERPTDAY KETHNLVVSP RDTYVGGLVS NLQVAELIAC VAKNRRAAYC KVVELVAETT APLLPTEDLL
401: ARVPSDPGRA PPPAKESPPA AAAAPAPVAA PPAPAPAPAP APPAVAAPPA PAPAPAAAAA PPAPAPTAEP APAAAAKAER PLSPYAAYEG LKPPSSPTPS
501: FSSGTTGQAL KESPPAPVPA PAPAAPAPPP PPPAAPAAAA KPRPLSPYAA YEGLKPPSSP TPSRSSSKKQ DAGDSPSPPP TAASPDAATS TTAEAAAESS
601: SPLLDSNPNG APPTAPATGD PGRPLSPYAR YEDLKPPTTP TPSAPKV
101: AGGNGPLACS ASARRSRRCG YHHGAPLISL ARPSSSARSF PAGRVYAMAA AATAPVKEQD LVFVAGATGK VGSRTVRELI KLGFRVRAAV RSKERASPLV
201: QSVERLELGE GSAPASRLEL VECDLEKQGE AGIKAAIGDA ALVVCSIGAS EKEILDVTGP YRIDYVATAN LVRAAAKAGV EHFVLVTSLG TTRFGFPAAL
301: LNLFWGVLCW KKMAEEALVA SGVPYTIVRP GGMERPTDAY KETHNLVVSP RDTYVGGLVS NLQVAELIAC VAKNRRAAYC KVVELVAETT APLLPTEDLL
401: ARVPSDPGRA PPPAKESPPA AAAAPAPVAA PPAPAPAPAP APPAVAAPPA PAPAPAAAAA PPAPAPTAEP APAAAAKAER PLSPYAAYEG LKPPSSPTPS
501: FSSGTTGQAL KESPPAPVPA PAPAAPAPPP PPPAAPAAAA KPRPLSPYAA YEGLKPPSSP TPSRSSSKKQ DAGDSPSPPP TAASPDAATS TTAEAAAESS
601: SPLLDSNPNG APPTAPATGD PGRPLSPYAR YEDLKPPTTP TPSAPKV
001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
Arabidopsis Description
TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.