Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G277900.1 | Wheat | plastid | 74.45 | 90.91 |
| TraesCS5B01G270200.1 | Wheat | plastid | 74.74 | 90.14 |
| TraesCS5A01G269800.1 | Wheat | cytosol, extracellular, plastid | 80.88 | 85.63 |
| Zm00001d007921_P001 | Maize | plastid | 28.91 | 62.86 |
| Os10t0100300-01 | Rice | nucleus, plastid | 44.82 | 61.77 |
| EER97808 | Sorghum | plastid | 31.82 | 55.19 |
| GSMUA_Achr8P04880_001 | Banana | endoplasmic reticulum, vacuole | 35.62 | 48.32 |
| VIT_03s0063g02020.t01 | Wine grape | plastid | 36.06 | 46.69 |
| KRH24515 | Soybean | plastid | 35.62 | 46.21 |
| KRH29518 | Soybean | vacuole | 35.18 | 43.27 |
| KRH24514 | Soybean | plastid | 25.84 | 42.14 |
| CDX92286 | Canola | plastid | 38.83 | 41.43 |
| CDX99298 | Canola | plastid | 38.54 | 41.19 |
| Bra022369.1-P | Field mustard | plastid | 38.54 | 41.06 |
| AT3G18890.1 | Thale cress | plastid | 37.23 | 39.78 |
| PGSC0003DMT400021326 | Potato | cytosol, peroxisome, plastid | 36.93 | 37.04 |
| KRH29515 | Soybean | plastid | 10.07 | 35.57 |
| HORVU7Hr1G083360.1 | Barley | mitochondrion, plastid | 14.74 | 35.44 |
| Solyc10g051110.1.1 | Tomato | plastid | 36.79 | 34.33 |
| HORVU1Hr1G004430.3 | Barley | plastid | 10.95 | 23.66 |
| HORVU2Hr1G069110.2 | Barley | plastid | 10.95 | 21.25 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G074000.3 | EnsemblPlantsGene:HORVU5Hr1G074000 | Gene3D:3.40.50.720 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0098807 | InterPro:NAD(P)-bd_dom |
| InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR14194 | PANTHER:PTHR14194:SF83 | PFAM:PF13460 | PRINTS:PR01217 | SEG:seg |
| SUPFAM:SSF51735 | UniParc:UPI000B461C8A | UniProt:A0A287RSR0 | MapMan:1.1.5.2.2.2 | MapMan:23.1.3.5.3 | : |
Description
No Description!
Coordinates
chrchr5H:+:541792791..541795531
Molecular Weight (calculated)
69673.4 Da
IEP (calculated)
8.988
GRAVY (calculated)
-0.253
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: ATPPGNGGTR AGAVTTHAVL LEAGRPRVPF PAPASPSIGT TCHVPMPPSV QPLHGHWAED GGGDEERAPR YPARSTRPRH VGHHTSTLDA IRGHEQPPRG
101: VGDQGNPGDI RGVTGAAETY NGSIDMDAKA VAVSLSAPLP RCRVAGGNGP LACSASARRS RRCGYHHGAP RISLARPSSS ARSFPAGRVY AMAAAAAPVK
201: EQDLVFVAGA TGKIGSRTVR ELIKLGFRVR AAVRSKERAS PLVQSVERLE LGEGTAAASR LELVECDLEK QGEAGIKAAI GDAALVVCSI GASEKEILDV
301: TGPYRIDYVA TANLVRAAAK AGVEHFVLVT SLGTTRFGFP AALLNLFWGV LCWKKMAEEA LVASGVPYTI VRPGGMERPT DAYKETHNLV VSPRDTYVGG
401: LVSNLQVAEL IACVAKNRRA AYCKVVEVVA ETTAPLLPTE DLLARVPSDP GRAPPPAPAA PAVVTEAPKE PPPAAAAAPP PAAAPPATAA EPAPVAAPPA
501: PSPAPAAAAK AERPLSPYAA YEGLKPPSSP TPSFSSGTTG QAAKESPPAP APAPAPAPAP AAPASPPPPP AAPAAAKQRP LSPYAAYEGL KPPSSPTPSR
601: SSSKKKDDGD SPSPPPSAAS PDAATTTTTA EAAAESSSPL LDSNANGVPP TAAPATADPG RPLSPYARYE DLKPPTTPTP SAPKV
101: VGDQGNPGDI RGVTGAAETY NGSIDMDAKA VAVSLSAPLP RCRVAGGNGP LACSASARRS RRCGYHHGAP RISLARPSSS ARSFPAGRVY AMAAAAAPVK
201: EQDLVFVAGA TGKIGSRTVR ELIKLGFRVR AAVRSKERAS PLVQSVERLE LGEGTAAASR LELVECDLEK QGEAGIKAAI GDAALVVCSI GASEKEILDV
301: TGPYRIDYVA TANLVRAAAK AGVEHFVLVT SLGTTRFGFP AALLNLFWGV LCWKKMAEEA LVASGVPYTI VRPGGMERPT DAYKETHNLV VSPRDTYVGG
401: LVSNLQVAEL IACVAKNRRA AYCKVVEVVA ETTAPLLPTE DLLARVPSDP GRAPPPAPAA PAVVTEAPKE PPPAAAAAPP PAAAPPATAA EPAPVAAPPA
501: PSPAPAAAAK AERPLSPYAA YEGLKPPSSP TPSFSSGTTG QAAKESPPAP APAPAPAPAP AAPASPPPPP AAPAAAKQRP LSPYAAYEGL KPPSSPTPSR
601: SSSKKKDDGD SPSPPPSAAS PDAATTTTTA EAAAESSSPL LDSNANGVPP TAAPATADPG RPLSPYARYE DLKPPTTPTP SAPKV
001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
Arabidopsis Description
TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.