CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24515	Soybean	plastid	89.23	94.13
KRH29515	Soybean	plastid	28.55	81.96
KRH24514	Soybean	plastid	49.19	65.24
VIT_03s0063g02020.t01	Wine grape	plastid	56.73	59.74
Zm00001d007921_P001	Maize	plastid	32.67	57.78
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	45.78	50.49
Os10t0100300-01	Rice	nucleus, plastid	44.88	50.3
EER97808	Sorghum	plastid	34.83	49.11
CDX99298	Canola	plastid	51.71	44.93
AT3G18890.1	Thale cress	plastid	50.81	44.15
CDX92286	Canola	plastid	50.81	44.08
Bra022369.1-P	Field mustard	plastid	50.45	43.7
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	53.32	43.48
TraesCS5D01G277900.1	Wheat	plastid	43.45	43.14
TraesCS5B01G270200.1	Wheat	plastid	43.63	42.78
Solyc10g051110.1.1	Tomato	plastid	53.32	40.46
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	43.27	37.25
HORVU5Hr1G074000.3	Barley	mitochondrion	43.27	35.18
KRH42344	Soybean	plastid	15.8	30.34
KRH58466	Soybean	plastid	15.62	29.79
KRG99976	Soybean	nucleus	11.13	24.31
KRH07338	Soybean	plastid	12.93	21.62
KRH66235	Soybean	plastid	12.93	20.34
KRH49116	Soybean	nucleus	11.85	19.94

Protein Annotations

EMBL:ACUP02006805	EnsemblPlants:KRH29518	EnsemblPlantsGene:GLYMA_11G121100	EntrezGene:100802919	Gene3D:3.40.50.720	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR14194	PANTHER:PTHR14194:SF83
PFAM:PF13460	ProteinID:KRH29517.1	ProteinID:KRH29518	ProteinID:KRH29518.1	SEG:seg	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI0003DE8C3E	UniProt:A0A0R0HG02	MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	:

Description

hypothetical protein

Coordinates

chr11:+:9243975..9249414

Molecular Weight (calculated)

59269.7 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.204

Length

557 amino acids

Sequence
(BLAST)

001: MDNITNTIKF KTIHIFILLF SFPDIILLAS PMEAFSVQSL TATTIPTSSL SRRAATDKPS ATSHVNLSHF TRYPCTTKHK IRCTRAQASG STKSCTGTAE
101: GISEKTDSKD DNLVFVAGAT GRVGSRTVRE LIKLGFRVRA GVRSAQRAGA LVQSVEQLKL DGANGGVQAV EKLEIVECDL EKPETIGSAL GNASTVICSI
201: GASEKEVFDI TGPFRIDYLA TKNLIDAATV TKVNHFILVT SLGTNKIGFP AAILNLFWGV LVWKRKAEEA LLASGLPYTI VRPGGMERPT DAFKETHNIT
301: LSTEDTLFGG LVSNLQIAEL LAVMAKNRDL SYCKIVEAIA ETTSPLTPME GLLARIPSQR PYISSPKKPD IAVVSIPDPP ANVVAKEPKV ATQQETAQPK
401: PVANQPLSPY IVYDDLKPPS SPSPSQPGGG KQTKISETVP QPSASDTPSS VLGVDGDSQT TSSSKVEKPL SPYVVYPDLK PPTSPSPNAP TVSVSTPAAA
501: GVPKIDTISS NGPAQLSTAD EPKKEHLPEP KSTPLSPYTM YEDLKPPASP SPSFRNS

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.