CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	83.14	83.14
Solyc09g010930.2.1	Tomato	extracellular	83.14	83.14
Zm00001d035672_P001	Maize	peroxisome	36.47	75.61
KRH49116	Soybean	nucleus	96.47	74.32
PGSC0003DMT400022763	Potato	extracellular	82.75	70.81
Zm00001d011069_P001	Maize	plastid	80.0	68.46
TraesCS1D01G030600.1	Wheat	golgi	78.82	67.22
EES17563	Sorghum	plastid	78.82	67.22
TraesCS1A01G030100.1	Wheat	plastid	78.43	66.89
TraesCS1B01G037100.1	Wheat	plastid	78.43	66.67
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	85.49	66.26
Os05t0110300-01	Rice	extracellular	79.22	64.33
Bra005175.1-P	Field mustard	plastid	80.78	63.98
AT2G37660.1	Thale cress	plastid	81.18	63.69
CDY65254	Canola	plastid	79.61	62.65
HORVU1Hr1G004430.3	Barley	plastid	77.65	62.46
Bra017165.1-P	Field mustard	plastid	79.61	61.89
CDX93359	Canola	plastid	79.22	61.4
CDX91377	Canola	cytosol	63.92	58.21
CDX74941	Canola	plastid	49.02	43.4
KRH42344	Soybean	plastid	26.27	23.1
KRH07338	Soybean	plastid	29.8	22.82
KRH58466	Soybean	plastid	25.88	22.6
KRH66235	Soybean	plastid	30.2	21.75
KRH24514	Soybean	plastid	20.39	12.38
KRH24515	Soybean	plastid	25.1	12.12
KRH29518	Soybean	vacuole	24.31	11.13
KRH29515	Soybean	plastid	8.24	10.82

Protein Annotations

EMBL:ACUP02011356	EnsemblPlants:KRG99976	EnsemblPlantsGene:GLYMA_18G182600	EntrezGene:100776864	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR14194	PANTHER:PTHR14194:SF61	PFAM:PF13460	ProteinID:KRG99976	ProteinID:KRG99976.1
SUPFAM:SSF51735	UniParc:UPI000233EFA3	UniProt:I1N2I4	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr18:-:44003695..44009842

Molecular Weight (calculated)

27632.9 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.316

Length

255 amino acids

Sequence
(BLAST)

001: MAESEKSTVL VTGAGGRTGQ IVYKKLKERP NQYVARGLVR TDESKQNIGA ADDVFVGDIR HAESIVPAIQ GIDALIILTS AVPQIKPGFD PTKGQRPEFY
101: FDDGAYPEQV DWIGQKNQID AAKAAGVKHI VLVGSMGGTD LNHPLNSLGN GNILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGLRELL VGKDDELLQT
201: ETRTITRSDV AEVCIQALNY EEAKFKAFDL ASKPEGAGSA TKDLKALFSQ ITTRF

Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)

001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF

Arabidopsis Description

Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.