CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29515	Soybean	plastid	30.0	64.95
KRH24515	Soybean	plastid	65.24	51.89
KRH29518	Soybean	vacuole	65.24	49.19
Zm00001d007921_P001	Maize	plastid	36.43	48.57
VIT_03s0063g02020.t01	Wine grape	plastid	53.81	42.72
EER97808	Sorghum	plastid	39.05	41.52
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	45.95	38.22
Os10t0100300-01	Rice	nucleus, plastid	42.62	36.02
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	51.43	31.63
CDX99298	Canola	plastid	48.1	31.51
TraesCS5D01G277900.1	Wheat	plastid	41.67	31.19
CDX92286	Canola	plastid	47.62	31.15
AT3G18890.1	Thale cress	plastid	47.38	31.05
TraesCS5B01G270200.1	Wheat	plastid	41.9	30.99
Bra022369.1-P	Field mustard	plastid	47.14	30.79
Solyc10g051110.1.1	Tomato	plastid	51.19	29.29
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	41.9	27.2
KRH42344	Soybean	plastid	17.86	25.86
HORVU5Hr1G074000.3	Barley	mitochondrion	42.14	25.84
KRH58466	Soybean	plastid	17.62	25.34
KRG99976	Soybean	nucleus	12.38	20.39
KRH07338	Soybean	plastid	15.24	19.22
KRH66235	Soybean	plastid	15.71	18.64
KRH49116	Soybean	nucleus	12.86	16.31

Protein Annotations

EMBL:ACUP02007178	EnsemblPlants:KRH24514	EnsemblPlantsGene:GLYMA_12G046100	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR14194	PANTHER:PTHR14194:SF83	PFAM:PF13460	ProteinID:KRH24514	ProteinID:KRH24514.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0006EDF489	UniProt:A0A0R0H848	MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	:

Description

hypothetical protein

Coordinates

chr12:+:3348096..3352577

Molecular Weight (calculated)

45836.8 Da

IEP (calculated)

9.256

GRAVY (calculated)

-0.241

Length

420 amino acids

Sequence
(BLAST)

001: MIKTIHKLHN SPSHSQSQRH PSTYAYGGFL RTVTIPSNLS RREATEKPSV SHVNLSHFTR YPGTSRATKH KIPATMNAAC SAKTITATAE GISEKTDSKD
101: DNLVFVACAT GRVGSRSVRE LIKLGFRVRA GVQNAQRAGA LVQSVEQLKL DGASGGGASP AVEKLEILKC DLEKPDTIGY ASKVICSIVA SEKGGFHITA
201: PFQFPKDYQV TKNLIEAATV AKVNHFIMVT SLGTNKIGFL LFWGFLIWKR KEEEALLASG LPYAIVRTGC MEQPTDAFKE THNITLSRED TLFRGQVSNL
301: QIAELMAVRA KNRDLSYCKI VEVIAETNAP LSPMEELLAK IPSQRPYISS PKEPDIAAVS VPDPSANVVA AEPSVATQKE TAQPKPVANQ PLSPYTVYDD
401: LKATIISSIS AWWWETNKDQ

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.