CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92286	Canola	plastid	92.98	92.83
AT3G18890.1	Thale cress	plastid	78.94	78.94
Zm00001d007921_P001	Maize	plastid	27.77	56.51
VIT_03s0063g02020.t01	Wine grape	plastid	46.49	56.33
KRH24515	Soybean	plastid	45.87	55.68
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	41.34	52.48
KRH29518	Soybean	vacuole	44.93	51.71
Os10t0100300-01	Rice	nucleus, plastid	39.0	50.3
EER97808	Sorghum	plastid	29.64	48.1
KRH24514	Soybean	plastid	31.51	48.1
TraesCS5D01G277900.1	Wheat	plastid	41.65	47.59
TraesCS5B01G270200.1	Wheat	plastid	42.12	47.54
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	47.11	44.22
KRH29515	Soybean	plastid	13.1	43.3
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	42.12	41.73
Solyc10g051110.1.1	Tomato	plastid	47.27	41.28
HORVU5Hr1G074000.3	Barley	mitochondrion	41.19	38.54
CDY43675	Canola	plastid	15.29	34.88
CDY10458	Canola	peroxisome, plastid	10.3	26.09
CDY40342	Canola	endoplasmic reticulum, peroxisome, plastid	9.83	24.9
CDY68555	Canola	plastid	11.54	22.36
CDY13439	Canola	plastid	11.54	22.29
CDX93359	Canola	plastid	10.14	19.76
CDY65254	Canola	plastid	9.98	19.75
CDX91377	Canola	cytosol	8.42	19.29
CDX74941	Canola	plastid	7.49	16.67

Protein Annotations

EnsemblPlants:CDX99298	EnsemblPlantsGene:GSBRNA2T00107570001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR14194
PANTHER:PTHR14194:SF83	PFAM:PF13460	ProteinID:CDX99298	ProteinID:CDX99298.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0004EE716A	MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	:	:	:

Description

BnaC05g34130D

Coordinates

chrLK031909:-:984464..988217

Molecular Weight (calculated)

68590.4 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.357

Length

641 amino acids

Sequence
(BLAST)

001: MEGTSFLRGQ PLTTVPSLPR QRFLLQGWKN NRIVRFSGLT NHSDSIKSRS FFDLSLRASD KAPIKASSAV TEANPTNLVS KEHDLVFVAG ATGKVGSRTV
101: RELLKLGFRV KAGVRSAQRA SSLVQSVKDM NTDEGTQPVE KLEIVECDLE KKDSIQPALG NASVVICCIG ASEKEISDIT GPYRIDYLAT KNLVDAATYA
201: KVNNFMLVTS LGTNKFGFPA AILNLFWGVL CWKRKAEEAL IASGLNYAIV RPGGMERPTD AYKETHNLTL ALDDTLFGGQ VSNLQVAELL ACMAKNPQLS
301: CSKIVEVVAE TTAPLTPIEK LLEKIPSKRP YVPPPKESVP AKEVTPVPAE PVKQESVAAK EVTPVLTEPV TKEPTAPKED KAPAEVKDVK PRPLSPYAAY
401: EDLKPPTSPI PATALGATKA KEVDATQVPE VEETQVPVEA NAVPPPESLV ETSVPVVEVK QVEEKKERPL SPYASYENLK PPSSPTPKAS GIQKSDTLAP
501: VPTDSDTGES STVATTVTEE AEAPPAIPKM RPLSPYAAYA DLKPPTSPTP ASTGPKKTAP AEEISEVPGG NDVVETVDGS VNTTESASVP EAETINSVTD
601: TSLTPEESAA DQPKPRPLSP YTMYEDMKPP TSPLPSPVIN H

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.