Factsheet for Solyc10g051110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	86.38	92.83
KRH24515	Soybean	plastid	41.42	57.58
VIT_03s0063g02020.t01	Wine grape	plastid	41.42	57.47
Zm00001d007921_P001	Maize	plastid	24.39	56.83
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	36.78	53.47
KRH29518	Soybean	vacuole	40.46	53.32
KRH24514	Soybean	plastid	29.29	51.19
Os10t0100300-01	Rice	nucleus, plastid	33.79	49.9
EER97808	Sorghum	plastid	26.7	49.62
AT3G18890.1	Thale cress	plastid	41.28	47.27
CDX99298	Canola	plastid	41.28	47.27
KRH29515	Soybean	plastid	12.4	46.91
CDX92286	Canola	plastid	40.74	46.57
Bra022369.1-P	Field mustard	plastid	40.46	46.19
TraesCS5D01G277900.1	Wheat	plastid	34.47	45.1
TraesCS5B01G270200.1	Wheat	plastid	34.6	44.72
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	34.33	38.95
HORVU5Hr1G074000.3	Barley	mitochondrion	34.33	36.79
Solyc02g070760.2.1	Tomato	plastid	12.81	31.97
Solyc02g070770.2.1	Tomato	plastid	12.4	31.16
Solyc09g010930.2.1	Tomato	extracellular	9.13	26.27
Solyc01g008920.2.1	Tomato	plastid	10.22	23.01

Protein Annotations

EnsemblPlants:Solyc10g051110.1.1	EnsemblPlantsGene:Solyc10g051110.1	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ncoils:Coil
PANTHER:PTHR14194	PANTHER:PTHR14194:SF83	PFAM:PF13460	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000276A6CC
UniProt:K4D0R4	MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	:	:	:

Description

No Description!

Coordinates

chr10:-:51521968..51529146

Molecular Weight (calculated)

78094.1 Da

IEP (calculated)

5.687

GRAVY (calculated)

-0.423

Length

734 amino acids

Sequence
(BLAST)

001: MELRCLQTLN IPATALAEKP FLCGHPITLI QTSTKRGPNS KNLKTLRFRT QISAKISSLE PQGTAKDVKS KDANLVFVAG ATGRVGSRTV RELLKLGFKV
101: RAGVRSAQRA QPLVKSVEQI KLENATDGGA KAIEKLEIVE CDLEKSYQIR PALGDASIVI CCIGASEKEI FDVTGPYRID YLATKNLIDA ATVAKVDHFI
201: LLTSLGTNKV GFPAAILNLF WGVLLWKRKA EEALLASGLP YTIVRPGGME RPTDSFKETH NITLSEEDTL FGGLVSNLQV AELMAVMAKN RSLSYCKVVE
301: VVAETTAPLT PMEDLLAKIP PQRVEVSPPK ETGDLQKSAT PTSITSEIPD ALLEKKPSET KLKAAAPLSP YTAYAELKPP TSPSPIPPGG HQAGASGAED
401: SKPTKKASSV VDYAFDKAEL LTTRPSSPYA AYEDLKPPTS PSPNPPGGRQ EGSSGAEDGE PTKAVSSVVD STFDKVELLT TRPLSPYTAY EDLKPPTSPS
501: PIPPGGRQEG ATGAEDSEHT KAASSVVDST FDKAELLTTR PLSPYTAYED LKPPTSPIPI PPGGRQEGAS GAEDSEHTKA ASSVVDSTFD KAELLTTSYE
601: DLKPPTSPST NPPGGRQEGA SGAENTKPTK EASSVYLFTF DKAELVTTRP LSPYTAYEDL KPPRSPSPRP SGLKSSATAE VTSAVTGGND VAIDSANNFS
701: KEDSSKSSAF CHSPYPAYED FKPPSSPTPS FNKM

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.