Factsheet for Solyc02g070760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g121460.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT2G34460.1	Solyc03g121460.1.1	AT1G55190.1	21798944
AT2G34460.1	Solyc03g121460.1.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03090.t01	Wine grape	cytosol	68.03	80.0
Solyc02g070770.2.1	Tomato	plastid	74.15	74.66
KRH42344	Soybean	plastid	69.73	70.69
KRH58466	Soybean	plastid	68.71	69.18
CDY43675	Canola	plastid	61.22	64.06
AT2G34460.1	Thale cress	plastid	60.88	63.93
Bra021912.1-P	Field mustard	plastid	61.56	62.63
EES15131	Sorghum	plastid	54.76	56.89
TraesCS7D01G346000.1	Wheat	plastid	55.1	56.84
Zm00001d031799_P001	Maize	plastid	54.42	56.54
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	54.76	56.49
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	54.42	56.14
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	54.42	56.14
Os06t0360300-01	Rice	plastid	54.76	55.33
GSMUA_Achr4P31210_001	Banana	plastid	26.87	44.89
Solyc09g010930.2.1	Tomato	extracellular	21.43	24.71
Solyc01g008920.2.1	Tomato	plastid	24.15	21.78
Solyc10g051110.1.1	Tomato	plastid	31.97	12.81

Protein Annotations

EnsemblPlants:Solyc02g070760.2.1	EnsemblPlantsGene:Solyc02g070760.2	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0016020	GO:GO:0016021	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR15020	PANTHER:PTHR15020:SF11
PFAM:PF13460	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002768867	UniProt:K4B857	MapMan:35.1

Description

No Description!

Coordinates

chr2:-:40378325..40382175

Molecular Weight (calculated)

32128.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.011

Length

294 amino acids

Sequence
(BLAST)

001: MEQQVMKARP LVFLAQNPFA QTSIHSLSTL KITFFHLKPT TYMEGSEIKE EKEAGIGQKK KIFVAGATGN TGKRIVEQLL AKGFAVKAGV RDVDKAKSVL
101: PEANPFLQIV KTDVTEGSAK LADAIGDDSN AVICATGFQP SWNLLTPWKV DNFGTVNLVD ACQKLGIDRF ILISSILVNG AAMGQLFNPV YIILNVMGLV
201: LVAKLQAERY IRKSGINYTI IRPGGLKNDP PQGNIVMQPE DTLFRGSISR DQVAEVAVEA LLHPESHYKV VEIVASTDAP KRSFEELFGS IEQQ

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.