CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	KRH69305	AT1G14340.1	21798944
AT2G34460.1	KRH10001	AT1G55190.1	21798944
AT2G34460.1	KRH23330	AT1G55190.1	21798944
AT2G34460.1	KRH44167	AT1G55190.1	21798944
AT2G34460.1	KRH47141	AT1G55190.1	21798944
AT2G34460.1	KRH10001	AT3G13720.1	21798944
AT2G34460.1	KRH23330	AT3G13720.1	21798944
AT2G34460.1	KRH44167	AT3G13720.1	21798944
AT2G34460.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58466	Soybean	plastid	97.59	96.92
VIT_10s0003g03090.t01	Wine grape	cytosol	72.07	83.6
AT2G34460.1	Thale cress	plastid	68.62	71.07
Solyc02g070760.2.1	Tomato	plastid	70.69	69.73
Solyc02g070770.2.1	Tomato	plastid	70.0	69.52
CDY43675	Canola	plastid	66.9	69.04
PGSC0003DMT400021415	Potato	plastid	69.31	68.84
Bra021912.1-P	Field mustard	plastid	67.59	67.82
TraesCS7D01G346000.1	Wheat	plastid	61.72	62.81
EES15131	Sorghum	plastid	61.03	62.54
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	61.03	62.11
Zm00001d031799_P001	Maize	plastid	60.34	61.84
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	60.34	61.4
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	60.34	61.4
Os06t0360300-01	Rice	plastid	60.69	60.48
GSMUA_Achr4P31210_001	Banana	plastid	27.24	44.89
KRG99976	Soybean	nucleus	23.1	26.27
KRH07338	Soybean	plastid	27.93	24.32
KRH66235	Soybean	plastid	27.24	22.32
KRH49116	Soybean	nucleus	23.45	20.54
KRH29515	Soybean	plastid	12.76	19.07
KRH24514	Soybean	plastid	25.86	17.86
KRH24515	Soybean	plastid	30.0	16.48
KRH29518	Soybean	vacuole	30.34	15.8

Protein Annotations

EntrezGene:100812074	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02004798	EMBL:BT097882	UniProt:C6TJN4
EnsemblPlantsGene:GLYMA_08G084600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0016020	GO:GO:0016021
EnsemblPlants:KRH42344	ProteinID:KRH42344	ProteinID:KRH42344.1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460
PANTHER:PTHR15020	PANTHER:PTHR15020:SF11	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0001B167D6	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:6369478..6371855

Molecular Weight (calculated)

31460.0 Da

IEP (calculated)

9.666

GRAVY (calculated)

-0.063

Length

290 amino acids

Sequence
(BLAST)

001: MSMAATLTAV RIPTFHQRHL RKHFTAPSSS LRLLNLAKME GSEISEQVGE DLGAKKKVFV AGATGSTGKR IVEQLLAKGF AVKAGVRDVD KAKTTLSSAN
101: PSLQIVKADV TEGSDKLAEA IGDDSEAVVC ATGFRPGWDL LAPWKVDNFG TVNLVEACRK RNVNRFILIS SILVNGAAMG QLFNPAYIFL NVFGLTLVAK
201: LQAEKYIRKS GINYTIIRPG GLRNDPPTGN IVMEPEDTLY EGSISRSLVA EVAVEALAYP EASYKVVEIV SRPDAPKRPY HDLFGSIRQQ

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.