Factsheet for GSMUA_Achr4P31210_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P19960_001
GSMUA_Achr7P09070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	GSMUA_Achr3P19960_001	AT1G14340.1	21798944
AT2G34460.1	GSMUA_Achr7P09070_001	AT1G55190.1	21798944
AT2G34460.1	GSMUA_Achr7P09070_001	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03090.t01	Wine grape	cytosol	42.05	29.6
EES15131	Sorghum	plastid	46.02	28.62
AT2G34460.1	Thale cress	plastid	45.45	28.57
Solyc02g070770.2.1	Tomato	plastid	47.16	28.42
Os06t0360300-01	Rice	plastid	46.59	28.18
PGSC0003DMT400021415	Potato	plastid	46.59	28.08
TraesCS7D01G346000.1	Wheat	plastid	45.45	28.07
CDY43675	Canola	plastid	44.32	27.76
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	44.89	27.72
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	44.89	27.72
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	44.89	27.72
Bra021912.1-P	Field mustard	plastid	45.45	27.68
Zm00001d031799_P001	Maize	plastid	44.32	27.56
KRH58466	Soybean	plastid	45.45	27.4
KRH42344	Soybean	plastid	44.89	27.24
Solyc02g070760.2.1	Tomato	plastid	44.89	26.87
GSMUA_Achr3P17500_001	Banana	plastid	19.89	10.42
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	23.3	8.12
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	9.09	6.27

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941
GO:GO:0010287	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr4G31210_001	EnsemblPlants:GSMUA_Achr4P31210_001	EnsemblPlants:GSMUA_Achr4T31210_001	UniProt:M0STN3
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR15020	PANTHER:PTHR15020:SF11	SUPFAM:SSF51735
UniParc:UPI000294C323	SEG:seg	:	:	:	:

Description

Putative Os06g0360300 protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G31210_001]

Coordinates

chr4:-:28472403..28475159

Molecular Weight (calculated)

19000.4 Da

IEP (calculated)

5.336

GRAVY (calculated)

-0.333

Length

176 amino acids

Sequence
(BLAST)

001: MATTLHGSLP FRLPLPIKSS LTPALIPRNY FSFFAMAANA TSSAGDDAER TEVESDVKVE DNNNDKKKKK IFVAGSTGRT GKRIVERLLS GGYGVRAGAL
101: DLEKARSGLP QDPDLQIVRA DVTEGSEKLA EAIGDAEAVI CATGFRYSWD IFAPWKVAGG QFWYGEPSGS MPENWG

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.