Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 64.05 | 63.01 |
| Zm00001d026425_P003 | Maize | cytosol | 60.74 | 60.25 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 60.74 | 60.25 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 60.33 | 59.84 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 59.92 | 59.43 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 59.92 | 59.43 |
| PGSC0003DMT400065786 | Potato | cytosol, nucleus, plastid | 59.09 | 58.37 |
| AT1G14340.1 | Thale cress | nucleus | 57.85 | 57.38 |
| CDX84035 | Canola | nucleus | 57.85 | 57.38 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 59.5 | 57.37 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 58.68 | 57.03 |
| Bra019660.1-P | Field mustard | cytosol | 57.44 | 56.97 |
| Bra016705.1-P | Field mustard | nucleus | 57.44 | 56.97 |
| CDY62016 | Canola | nucleus | 54.96 | 56.84 |
| CDX96860 | Canola | nucleus | 57.02 | 56.56 |
| CDY49093 | Canola | cytosol | 57.02 | 56.33 |
| Solyc02g067390.2.1 | Tomato | cytosol | 57.85 | 54.9 |
| PGSC0003DMT400017749 | Potato | cytosol | 57.44 | 54.51 |
| Os04t0641400-02 | Rice | plastid | 62.4 | 52.61 |
| KRH69305 | Soybean | nucleus | 61.57 | 51.2 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 51.65 | 49.02 |
| KRH40110 | Soybean | cytosol | 51.24 | 48.06 |
| Solyc05g007200.2.1 | Tomato | mitochondrion | 59.92 | 47.54 |
| AT3G01210.1 | Thale cress | cytosol | 46.28 | 44.98 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 45.04 | 43.25 |
| CDX74287 | Canola | cytosol | 45.04 | 43.25 |
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 45.04 | 43.25 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 35.54 | 35.25 |
| GSMUA_Achr4P10680_001 | Banana | cytosol | 36.78 | 33.58 |
| GSMUA_Achr8P04640_001 | Banana | cytosol | 35.95 | 32.71 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 35.12 | 30.58 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 34.3 | 29.86 |
| GSMUA_Achr4P00600_001 | Banana | cytosol, nucleus, plastid | 37.6 | 29.07 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 35.54 | 28.2 |
| GSMUA_Achr4P03340_001 | Banana | nucleus | 20.66 | 27.32 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.12 | 24.22 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr3G19960_001 | EnsemblPlants:GSMUA_Achr3P19960_001 | EnsemblPlants:GSMUA_Achr3T19960_001 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0SG62 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295F974 | InterPro:Vip1-like_RRM_plant | SEG:seg |
Description
Putative Protein vip1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G19960_001]
Coordinates
chr3:+:21194231..21202754
Molecular Weight (calculated)
26116.5 Da
IEP (calculated)
5.519
GRAVY (calculated)
-0.137
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSGYTVEV TNLSPNATER DLYDFFSFSG AIEHIEIIRT GEYASTAYVT FRDPHALETA VLLSGATIID QHVCITRWGS YDEDCSFWNR PSHEDNTQST
101: MPEVNHLNTT PREAVTMTQE VVKTMLAMGY ELSKDALIKA KAFDESHHVT ATAAAMVADL SNRSGLTDKI NAGLNAVTSV DERYHLSATT KAVVSATTRT
201: AANITNSVVS SSYFSAGALL VSDALNKAAK VAADLATHGA KR
101: MPEVNHLNTT PREAVTMTQE VVKTMLAMGY ELSKDALIKA KAFDESHHVT ATAAAMVADL SNRSGLTDKI NAGLNAVTSV DERYHLSATT KAVVSATTRT
201: AANITNSVVS SSYFSAGALL VSDALNKAAK VAADLATHGA KR
001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.