Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P09070_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07670.1 | GSMUA_Achr7P09070_001 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0057g01250.t01 | Wine grape | plastid | 71.51 | 72.23 |
| Os02t0725200-01 | Rice | plasma membrane | 71.31 | 71.31 |
| Zm00001d051668_P001 | Maize | plastid | 71.31 | 71.17 |
| EES07338 | Sorghum | plastid | 70.72 | 71.14 |
| PGSC0003DMT400044855 | Potato | plastid | 69.32 | 69.05 |
| Solyc07g045310.2.1 | Tomato | nucleus | 68.73 | 68.86 |
| AT3G07670.1 | Thale cress | plastid | 68.73 | 68.45 |
| TraesCS6A01G286800.2 | Wheat | plastid | 67.93 | 67.66 |
| TraesCS6B01G315800.1 | Wheat | plastid | 67.73 | 67.06 |
| KRH17729 | Soybean | plastid | 66.33 | 66.73 |
| TraesCS6D01G267500.2 | Wheat | plastid | 67.33 | 66.54 |
| Bra040022.1-P | Field mustard | plastid | 67.13 | 66.47 |
| CDY22127 | Canola | plastid | 66.73 | 66.08 |
| HORVU6Hr1G072050.4 | Barley | mitochondrion, plastid | 67.13 | 64.56 |
| Zm00001d051669_P002 | Maize | plastid | 65.34 | 64.19 |
| Zm00001d034120_P001 | Maize | cytosol | 10.56 | 46.49 |
| GSMUA_Achr3P16970_001 | Banana | plastid | 23.31 | 22.99 |
| GSMUA_Achr7P21060_001 | Banana | cytosol | 19.52 | 20.21 |
| GSMUA_Achr11P... | Banana | mitochondrion | 20.52 | 20.12 |
| GSMUA_Achr7P21080_001 | Banana | cytosol, plasma membrane, plastid | 19.72 | 18.89 |
Protein Annotations
| Gene3D:3.90.1410.10 | Gene3D:3.90.1420.10 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016740 | GO:GO:0030785 | GO:GO:0032259 |
| EnsemblPlantsGene:GSMUA_Achr3G10760_001 | EnsemblPlants:GSMUA_Achr3P10760_001 | EnsemblPlants:GSMUA_Achr3T10760_001 | InterPro:IPR001214 | InterPro:IPR011192 | InterPro:IPR036464 |
| UniProt:M0SDJ3 | PFAM:PF00856 | PFAM:PF09273 | PIRSF:PIRSF009328 | PFscan:PS50280 | PANTHER:PTHR13271 |
| PANTHER:PTHR13271:SF81 | InterPro:Rubisco_LSMT_MeTrfase_plant | InterPro:Rubisco_LSMT_subst-bd | InterPro:Rubisco_LSMT_subst-bd_sf | InterPro:SET_dom | SMART:SM00317 |
| SUPFAM:SSF81822 | SUPFAM:SSF82199 | UniParc:UPI000294C44D | SEG:seg | : | : |
Description
Putative Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G10760_001]
Coordinates
chr3:-:7940000..7949103
Molecular Weight (calculated)
56457.9 Da
IEP (calculated)
9.225
GRAVY (calculated)
-0.252
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQIFCRVLG SAQFPQVSWP PPRPAADSSS SAHVVRCRIR CSVSATSSNA LTGSEARVIP WGCEIESLES ASALQRWLSA SGLPPQKLEI QRVDVGERGL
101: VALNNIRKGE KLLFVPPSLV ITADSEWSCP EVGNVLKKNS VPDWPLLATY LLSEASLMSS SRWNRYISAL PRQPYSLLYW TPSELDTYLV ASQIRARAIE
201: RITNVIGTYN DLKLRIFSKH PELFPEEVFN IDSFLWSFGI LFSRLVRLPS MNGKVALVPW ADMLNHSPQV ETFLDYDKSS QGIFFMTDQS YQPGEQVFIS
301: YGKKSNGELL LSYGFVPKEG TNPNDSVELS LSLNKSDKCY KEKLEALRKH GLSTPQRFPL QITGWPVEMM AYSYLVVSPS NMSQHFEEMA AASSNGTALK
401: MGIKNPELEE KALQFILDCC ESSISKYSKF LEGGGTPDSG TFSAKQANRK SLLKKMATDL CTSERRILYR TQYILRRRLR DMRSGELRAL TLFNGFRKLF
501: KQ
101: VALNNIRKGE KLLFVPPSLV ITADSEWSCP EVGNVLKKNS VPDWPLLATY LLSEASLMSS SRWNRYISAL PRQPYSLLYW TPSELDTYLV ASQIRARAIE
201: RITNVIGTYN DLKLRIFSKH PELFPEEVFN IDSFLWSFGI LFSRLVRLPS MNGKVALVPW ADMLNHSPQV ETFLDYDKSS QGIFFMTDQS YQPGEQVFIS
301: YGKKSNGELL LSYGFVPKEG TNPNDSVELS LSLNKSDKCY KEKLEALRKH GLSTPQRFPL QITGWPVEMM AYSYLVVSPS NMSQHFEEMA AASSNGTALK
401: MGIKNPELEE KALQFILDCC ESSISKYSKF LEGGGTPDSG TFSAKQANRK SLLKKMATDL CTSERRILYR TQYILRRRLR DMRSGELRAL TLFNGFRKLF
501: KQ
001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK
Arabidopsis Description
Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.