CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY37482
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	CDY37482	AT3G13720.1	21798944
AT3G07670.1	CDY51733	AT3G13720.1	21798944
AT3G07670.1	CDY51734	AT3G13720.1	21798944
AT3G07670.1	CDY55133	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040022.1-P	Field mustard	plastid	99.61	99.61
AT3G07670.1	Thale cress	plastid	91.32	91.87
VIT_12s0057g01250.t01	Wine grape	plastid	72.19	73.64
PGSC0003DMT400044855	Potato	plastid	71.01	71.43
Solyc07g045310.2.1	Tomato	nucleus	70.02	70.86
KRH17729	Soybean	plastid	65.68	66.73
GSMUA_Achr3P10760_001	Banana	plastid	66.08	66.73
Zm00001d051668_P001	Maize	plastid	65.29	65.81
Os02t0725200-01	Rice	plasma membrane	65.09	65.74
EES07338	Sorghum	plastid	64.3	65.33
TraesCS6A01G286800.2	Wheat	plastid	64.1	64.48
TraesCS6B01G315800.1	Wheat	plastid	63.91	63.91
TraesCS6D01G267500.2	Wheat	plastid	63.91	63.78
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	63.91	62.07
Zm00001d051669_P002	Maize	plastid	60.35	59.88
Zm00001d034120_P001	Maize	cytosol	9.07	40.35
CDX85607	Canola	plastid	18.93	25.88
CDX91073	Canola	mitochondrion, nucleus, plastid	21.3	25.17
CDY40197	Canola	cytosol	7.69	22.94
CDX73405	Canola	mitochondrion	13.61	22.33
CDY40200	Canola	mitochondrion	19.92	21.63
CDY16126	Canola	plastid	19.33	20.21
CDX93745	Canola	cytosol	6.31	20.0
CDY33784	Canola	plastid	18.74	19.63
CDX85606	Canola	cytosol	3.94	19.61
CDY36426	Canola	cytosol	1.97	14.08
CDY57896	Canola	cytosol	23.67	13.09
CDX69594	Canola	cytosol	23.67	13.09
CDX74033	Canola	endoplasmic reticulum	5.33	12.98
CDY07978	Canola	endoplasmic reticulum	5.33	12.92

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	GO:A0A078GAR6	UniProt:A0A078GAR6	EnsemblPlants:CDY22127
ProteinID:CDY22127	ProteinID:CDY22127.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0030785	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00018517001
InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	PFAM:PF00856	PFAM:PF09273	PIRSF:PIRSF009328
PFscan:PS50280	PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0004EE9419	SEG:seg

Description

BnaC01g39740DBnaC01g39740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAR6]

Coordinates

chrLK032128:+:42151..45296

Molecular Weight (calculated)

57784.1 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.388

Length

507 amino acids

Sequence
(BLAST)

001: MAKASNFLQS TLLPSSSPLR NLRSQPLPLS FPPLPSSRHR PITIHCSVSA GETTKRSLEE APDISWGCEI DSVENATSLQ RWLSDSGLPP QKMAIDKVDI
101: GERGLVASQS LRKGEKLLFV PPSLVISADS VWTNGEAGEV MKRYDVPDWP LLATYLISEA SFQKGSRWFN YISALPRQPY SLLYWTRTEL DMYLEASQIR
201: ERAIERITNV VVTYEDLRSR IFSKHPNLFP KEVFNDETFK WSFGILFSRL VRLPSMDGRF ALVPWADMLN HNCEVETYLD YDKSSKGVVF TADRPYQPGE
301: QVFISYGNKS NGELLLSYGF VPREGTNPSD SVELAMSLRK NDTCYKEKLD ALKKHGLSTP QCFPVRITGW PLELMAYAYL VVSPPDMSNS FEEMAKAASN
401: KSSTNKDLKY PEIEEEALQF ILDSCETSIS KYSRFLKESG SMDLDITSPK QLNRKAFLKQ LAVDLSTSER RILYRAQYIL RRRLRDIRSG ELKALRLFSG
501: IRNFFKQ

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.