Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14260.1 | CDY26697 | AT1G19180.1 | 21798944 |
| AT5G14260.1 | CDY41023 | AT1G19180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91073 | Canola | mitochondrion, nucleus, plastid | 84.31 | 20.05 |
| Bra023454.1-P | Field mustard | plastid | 83.33 | 16.83 |
| Zm00001d044101_P002 | Maize | cytosol | 60.78 | 16.19 |
| CDY36426 | Canola | cytosol | 10.78 | 15.49 |
| AT5G14260.1 | Thale cress | plastid | 74.51 | 14.79 |
| KRG94324 | Soybean | plastid | 65.69 | 13.35 |
| KRH57642 | Soybean | plastid | 64.71 | 13.12 |
| VIT_14s0171g00310.t01 | Wine grape | plastid | 64.71 | 12.97 |
| EES01150 | Sorghum | plastid | 63.73 | 12.7 |
| TraesCS5D01G123700.2 | Wheat | plastid | 61.76 | 12.57 |
| TraesCS5A01G106100.1 | Wheat | golgi | 60.78 | 12.38 |
| PGSC0003DMT400017960 | Potato | plastid | 61.76 | 12.0 |
| GSMUA_Achr3P16970_001 | Banana | plastid | 58.82 | 11.79 |
| TraesCS5B01G110900.1 | Wheat | plastid | 61.76 | 11.75 |
| HORVU5Hr1G033180.3 | Barley | mitochondrion | 60.78 | 11.7 |
| Zm00001d011448_P002 | Maize | plastid | 61.76 | 11.67 |
| Os12t0236900-01 | Rice | plastid | 55.88 | 11.2 |
| CDX69594 | Canola | cytosol | 83.33 | 9.27 |
| CDY57896 | Canola | cytosol | 82.35 | 9.16 |
| CDY40197 | Canola | cytosol | 10.78 | 6.47 |
| CDY33784 | Canola | plastid | 20.59 | 4.34 |
| CDY16126 | Canola | plastid | 20.59 | 4.33 |
| CDY22127 | Canola | plastid | 19.61 | 3.94 |
| CDX74033 | Canola | endoplasmic reticulum | 7.84 | 3.85 |
| CDY07978 | Canola | endoplasmic reticulum | 7.84 | 3.83 |
| CDY40200 | Canola | mitochondrion | 13.73 | 3.0 |
| Solyc02g068050.2.1 | Tomato | plastid | 5.88 | 1.4 |
| CDX93745 | Canola | cytosol | 0.98 | 0.62 |
| CDX85607 | Canola | plastid | 1.96 | 0.54 |
| CDX73405 | Canola | mitochondrion | 0.98 | 0.32 |
Protein Annotations
| EnsemblPlants:CDX85606 | EnsemblPlantsGene:GSBRNA2T00143330001 | Gene3D:3.90.1420.10 | InterPro:IPR036464 | InterPro:Rubisco_LSMT_subst-bd | InterPro:Rubisco_LSMT_subst-bd_sf |
| PANTHER:PTHR13271 | PANTHER:PTHR13271:SF9 | PFAM:PF09273 | ProteinID:CDX85606 | ProteinID:CDX85606.1 | SUPFAM:SSF81822 |
| UniParc:UPI0004EEC0E1 | MapMan:35.2 | : | : | : | : |
Description
BnaA02g02070D
Coordinates
chrLK031842:-:849317..849972
Molecular Weight (calculated)
11191.7 Da
IEP (calculated)
6.427
GRAVY (calculated)
0.047
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSVISSQGP VCSMSPCMER AVLDQLADYF MTRLSGYPTT LKEDDALLAD PSLNPRKRVA TRLVRLEKKM LAACLVATVD FLNELPDTTI SPCPALYAPS
101: LK
101: LK
001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK
Arabidopsis Description
Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.