Factsheet for Solyc02g068050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g042170.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT5G14260.1	Solyc12g009220.1.1	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017960	Potato	plastid	95.12	77.9
CDX85607	Canola	plastid	57.91	67.12
CDX91073	Canola	mitochondrion, nucleus, plastid	61.4	61.54
VIT_14s0171g00310.t01	Wine grape	plastid	72.33	61.1
AT5G14260.1	Thale cress	plastid	71.63	59.92
KRG94324	Soybean	plastid	68.6	58.76
Zm00001d044101_P002	Maize	cytosol	52.33	58.75
Bra008769.1-P	Field mustard	plastid	70.23	58.53
Bra023454.1-P	Field mustard	plastid	68.6	58.42
KRH57642	Soybean	plastid	67.67	57.85
GSMUA_Achr3P16970_001	Banana	plastid	66.74	56.39
TraesCS5A01G106100.1	Wheat	golgi	61.16	52.49
TraesCS5D01G123700.2	Wheat	plastid	61.16	52.49
Os12t0236900-01	Rice	plastid	60.47	51.08
EES01150	Sorghum	plastid	59.77	50.2
TraesCS5B01G110900.1	Wheat	plastid	60.7	48.69
HORVU5Hr1G033180.3	Barley	mitochondrion	60.0	48.68
Zm00001d011448_P002	Maize	plastid	59.53	47.41
CDX69594	Canola	cytosol	69.53	32.61
CDY57896	Canola	cytosol	69.3	32.5
Solyc07g045310.2.1	Tomato	nucleus	23.49	20.16
Solyc06g036700.1.1	Tomato	mitochondrion	8.84	18.72
Solyc05g013150.2.1	Tomato	plastid	17.21	15.88
Solyc05g013160.2.1	Tomato	plastid	16.74	14.75
Solyc06g036670.1.1	Tomato	cytosol	4.42	8.52
CDX85606	Canola	cytosol	1.4	5.88

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016279	GO:GO:0016740
GO:GO:0018026	GO:GO:0019538	InterPro:IPR036464	UniProt:K4B7D7	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9
InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	EnsemblPlantsGene:Solyc02g068050.2	EnsemblPlants:Solyc02g068050.2.1	UniParc:UPI0002767755

Description

No Description!

Coordinates

chr2:-:38096543..38099849

Molecular Weight (calculated)

47798.3 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.171

Length

430 amino acids

Sequence
(BLAST)

001: MDLVYSSMAK CISAPFPSFT HRPLALFSRV SISPKYANAR RLWKMCSASS SDTLVDNGPV KEGSKSLEVA SKKEGEYGDL KSWMHENGLP PCKVVIKDRP
101: SHDAKHLPIH YVAASEDLQA GDIAFAVPDS LVVTLERVLG NETIAELLTT NKLSELACLA LYLMYEKKQG KKSFWYPYIR ELDRQRARGQ LAVESPLLWS
201: DAELDYLTGS PTKADVLERA EGIKREYNEL DTVWFMAGSL FQQYPYEIPT EAFPFEIFKQ AFVAVQSCVV HLQKVSLARR FALVPLGPPL LSYCSNCKAM
301: LAAVDGAVQL VVDRSYSAGD PIVVWCGPQP NSKLLINYGF VDEENSHDRL MVEAALNTED PQYQDKRLAA QRNGKLSVQA FQVCVGKERE AVLEMLPYLR
401: LGYVSDPSEM ETVLSSQGPI CPSLCGKSSS

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.