Factsheet for TraesCS5B01G110900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	TraesCS2A01G169300.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS2B01G195600.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS2D01G176800.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS5A01G212800.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS5B01G211000.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS5D01G219300.2	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G123700.2	Wheat	plastid	90.49	96.81
TraesCS5A01G106100.1	Wheat	golgi	90.3	96.61
HORVU5Hr1G033180.3	Barley	mitochondrion	89.74	90.75
Zm00001d044101_P002	Maize	cytosol	63.25	88.51
Os12t0236900-01	Rice	plastid	80.22	84.48
EES01150	Sorghum	plastid	77.05	80.66
Zm00001d011448_P002	Maize	plastid	75.56	75.0
CDX91073	Canola	mitochondrion, nucleus, plastid	56.16	70.16
GSMUA_Achr3P16970_001	Banana	plastid	64.37	67.78
VIT_14s0171g00310.t01	Wine grape	plastid	61.57	64.83
KRG94324	Soybean	plastid	60.26	64.34
KRH57642	Soybean	plastid	60.07	64.02
CDX85607	Canola	plastid	44.22	63.88
Bra008769.1-P	Field mustard	plastid	60.82	63.18
Bra023454.1-P	Field mustard	plastid	59.33	62.97
AT5G14260.1	Thale cress	plastid	60.07	62.65
CDX85606	Canola	cytosol	11.75	61.76
PGSC0003DMT400017960	Potato	plastid	59.89	61.14
Solyc02g068050.2.1	Tomato	plastid	48.69	60.7
CDX69594	Canola	cytosol	61.57	35.99
CDY57896	Canola	cytosol	61.01	35.66
TraesCS6B01G315800.1	Wheat	plastid	21.46	22.68
TraesCS5B01G228300.1	Wheat	plastid	20.52	22.22
TraesCS3B01G605100.1	Wheat	mitochondrion	14.37	6.17

Protein Annotations

EnsemblPlants:TraesCS5B01G110900.1	EnsemblPlantsGene:TraesCS5B01G110900	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	InterPro:IPR036464
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	PFAM:PF09273	SEG:seg
SUPFAM:SSF81822	SUPFAM:SSF82199	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:163066563..163084119

Molecular Weight (calculated)

59726.1 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.193

Length

536 amino acids

Sequence
(BLAST)

001: MSLVRDDLAW KIWLHLAQSR LSLIHTNRSP ESRAPLMASS ALSGTHHRLL PCFLRRLPRP RTRSCSRLRL AACHADTLLS SSGTQRPPAP AACSSASSAG
101: GFSDWLLTNG LPPGKVAILE RPVPCSRGGK DRPLHFVAAG QDLEAGDVAF EVPMSLVVTL ERVLGDESVA ELLTTNKLSE LACLALYLMY EKKQGRDSLW
201: YPYIKELDRQ RGRGQLAVES PLLWTESELD YLNGSPMRDE VVVRDEGIRR EYNELDTLWF MAGSLFKQYP FDVPTEAFPF EIFKQAFVAV QSCVVHLQKV
301: SLARRFALVP LGPPLLTYKS NCKAMLTAVD GSVRLLVDRP YKAGEPIIVW CGPQPNSRLL LNYGFVDEDN PYDRIAIEAS LNTEDPQYQE KRMVAQRNGK
401: LAIQKFQVCV GKEKETISEM LPYLRLGYIS DPDEMQCILS SEGDTCPVSP CSERAVLDQL VVYLKSRLAG YPTTLDEDEA MLADGSLEPK KEVATRLVRL
501: EKKMLHGCLQ AANEFISGLP DHTVSPCPAL YAPELK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.